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Os07g0187400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.036) R2 : 0.739
β1 : -3.01 (0.132) R2dD : 0.32 R2D : 0.236
β2 : 2.1 (0.101) R2dC : 0.291 R2C : 0.28
β3 : 0.0913 (0.112) R2dE : 0.000538 R2E : 8.35e-05
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.32 (0.45) R2dD*E : 0.07 R2D*E : 0.0687
γ1 : -1.08 (0.0766) R2dN8 : 0.146 R2N8 : 0.0346
σ : 0.67
deviance : 206.65
__
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C
peak time of C : 8.21
E
wheather : radiation
threshold : 9.85
memory length : 550
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
207.07 0.676 12.3 -3.03 2.06 0.0281 -1.38 6.23 -1.08 8.14 7.7 660 -- --
255.11 0.744 12.3 -3.12 2.01 0.264 1.02 -- -1.09 8.24 20.02 474 -- --
206.65 0.67 12.2 -3.01 2.1 0.0913 -- 5.32 -1.08 8.21 9.85 550 -- --
254.16 0.743 12.3 -2.99 1.92 0.538 -- -- -1.1 8.56 20.09 473 -- --
272.76 0.769 12.3 -3.01 -- 2.87 -- 4.33 -1.02 -- 1.01 934 -- --
258.04 0.753 12.3 -3.09 2.11 -- 1.04 -- -1.09 7.94 -- -- -- --
260.81 0.756 12.3 -3.05 2.11 -- -- -- -1.09 8.09 -- -- -- --
281.3 0.781 12.3 -2.8 -- 2.91 -- -- -0.958 -- 0.58 981 -- --
483.74 1.02 12.3 -- 1.69 1.37 -- -- -0.796 9.52 30 493 -- --
504.12 1.05 12.3 -3.04 -- -- -- -- -1.07 -- -- -- -- --
506.76 1.05 12.2 -- 2.09 -- -- -- -0.753 8.2 -- -- -- --
462.41 1 12.2 -- -- 3.54 -- -- -0.602 -- 7.34e-07 1014 -- --
747.29 1.28 12.3 -- -- -- -- -- -0.731 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 205.95 temperature 10 720 > th dose dependent rect. 5 5
3 206.78 temperature 30 90 < th dose dependent rect. 19 18
5 207.06 radiation 10 720 < th dose independent rect. 16 21
7 207.18 radiation 10 720 < th dose independent rect. 11 21
11 207.44 temperature 30 90 < th dose dependent rect. 21 16
21 207.84 wind 9 30 < th dose independent sin 15 NA
25 208.00 radiation 10 720 < th dose independent rect. 6 22
27 208.10 wind 1 720 > th dose independent sin 0 NA
37 208.41 wind 1 720 > th dose independent rect. 19 18
42 208.49 wind 7 10 > th dose independent rect. 14 2
60 209.10 temperature 30 90 < th dose independent sin 7 NA
65 209.21 radiation 10 720 < th dose independent rect. 6 17
69 209.30 radiation 1 720 < th dose dependent sin 5 NA
70 209.31 temperature 25 720 < th dose independent rect. 3 8
81 209.49 humidity 90 720 < th dose independent rect. 5 11
85 209.57 radiation 10 720 < th dose dependent rect. 20 23
90 209.68 radiation 10 720 < th dose dependent rect. 5 23
92 209.74 wind 1 720 > th dose independent rect. 19 16
95 209.85 radiation 10 720 < th dose dependent rect. 17 23
104 210.08 radiation 10 720 < th dose dependent rect. 11 23
110 210.20 wind 1 720 > th dose independent rect. 3 17
113 210.22 radiation 10 720 < th dose independent no NA NA
124 210.39 radiation 10 720 < th dose dependent no NA NA
127 210.40 radiation 10 720 < th dose dependent rect. 9 23
128 210.44 wind 5 10 > th dose dependent rect. 14 2
129 210.45 temperature 20 720 > th dose independent rect. 5 14
135 210.62 temperature 30 90 < th dose independent sin 4 NA
137 210.64 radiation 10 720 < th dose dependent rect. 24 23
146 210.72 temperature 20 720 > th dose independent rect. 5 12
149 210.74 radiation 10 720 < th dose independent sin 20 NA
171 211.04 radiation 10 720 < th dose dependent rect. 5 17
176 211.09 radiation 1 720 > th dose independent sin 9 NA
191 211.25 temperature 10 270 > th dose dependent sin 2 NA
209 211.46 temperature 10 270 > th dose dependent rect. 5 12
210 211.47 wind 5 10 > th dose dependent rect. 12 4
211 211.49 wind 1 720 > th dose independent sin 9 NA
217 211.52 radiation 10 720 < th dose independent sin 10 NA
219 211.54 temperature 30 90 < th dose independent rect. 3 12
251 211.85 temperature 20 720 > th dose independent sin 1 NA
260 211.91 temperature 30 720 < th dose dependent rect. 2 7
274 212.07 radiation 10 720 < th dose independent rect. 11 10
278 212.09 temperature 30 720 < th dose dependent rect. 2 9
285 212.15 radiation 10 720 < th dose dependent rect. 19 20
296 212.18 radiation 10 720 < th dose independent rect. 14 5
315 212.42 radiation 1 270 > th dose dependent rect. 11 23
316 212.43 radiation 1 720 < th dose dependent rect. 1 6
325 212.49 radiation 10 720 < th dose dependent sin 21 NA
326 212.49 radiation 40 270 < th dose dependent rect. 16 21
351 212.66 radiation 1 720 < th dose independent rect. 1 6
358 212.73 radiation 1 720 > th dose independent rect. 18 16
362 212.75 radiation 1 720 < th dose independent sin 6 NA
366 212.76 temperature 30 90 < th dose dependent rect. 23 14
374 212.79 radiation 10 720 < th dose independent rect. 20 23
387 212.88 radiation 30 90 < th dose independent sin 12 NA
401 212.95 radiation 1 720 < th dose dependent rect. 23 17
410 213.01 wind 3 720 > th dose independent rect. 8 7
420 213.03 wind 1 720 > th dose independent rect. 23 21
426 213.08 radiation 1 720 < th dose independent rect. 23 17
431 213.12 radiation 40 270 < th dose dependent rect. 16 23
436 213.16 radiation 40 90 < th dose independent rect. 17 22
456 213.23 wind 3 270 > th dose independent rect. 11 4
486 213.38 radiation 1 720 > th dose independent rect. 4 6
527 213.53 radiation 20 720 < th dose dependent sin 9 NA
542 213.63 radiation 40 90 < th dose independent rect. 21 16
598 213.88 radiation 1 720 < th dose independent rect. 23 8
617 213.94 radiation 1 720 < th dose dependent rect. 18 14
619 213.95 radiation 1 720 < th dose dependent rect. 23 11
626 213.97 radiation 1 720 < th dose dependent rect. 19 12
665 214.15 wind 1 270 > th dose dependent rect. 11 5
667 214.16 wind 1 720 > th dose independent rect. 23 8
669 214.17 radiation 10 10 < th dose independent sin 15 NA
705 214.31 temperature 25 720 < th dose independent rect. 23 13
712 214.33 temperature 25 720 < th dose independent sin 6 NA
720 214.38 temperature 25 270 < th dose independent rect. 19 16
746 214.43 radiation 40 90 < th dose independent rect. 17 20
792 214.62 humidity 90 720 < th dose independent rect. 5 6
809 214.67 radiation 40 90 < th dose independent sin 6 NA
850 214.80 wind 1 270 > th dose independent sin 20 NA
867 214.84 radiation 10 720 < th dose dependent rect. 11 10
888 214.91 radiation 1 720 < th dose independent rect. 19 12
899 214.96 radiation 1 270 > th dose dependent rect. 9 23
914 215.00 radiation 1 720 > th dose independent rect. 11 23
929 215.04 radiation 40 270 < th dose independent sin 17 NA
996 215.22 radiation 1 720 < th dose independent rect. 23 11