BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0187400 Os07g0187400|003-125-F07
         (123 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10420.2  | chr3:3239307-3242274 FORWARD LENGTH=685             96   4e-21
AT1G73170.1  | chr1:27511722-27514783 REVERSE LENGTH=667           48   1e-06

>AT3G10420.2 | chr3:3239307-3242274 FORWARD LENGTH=685
          Length = 684

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 62/98 (63%), Gaps = 10/98 (10%)

Query: 24  QEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILPVKI 83
           +E RLAIEYIVIPGGEPVELLPR S+I+ RQLELVESYQL  E  GT  N RLQILP + 
Sbjct: 595 EEVRLAIEYIVIPGGEPVELLPRRSDIIVRQLELVESYQLAVENLGTHLNPRLQILPRRS 654

Query: 84  TXXXXXXXXXXXMPKQGSSDLIVSDNGGGSSFSRLPFL 121
           T                SS    +D   G++ +RLPFL
Sbjct: 655 TKKTLT----------SSSPQKSADGSMGTTGTRLPFL 682



>AT1G73170.1 | chr1:27511722-27514783 REVERSE LENGTH=667
          Length = 666

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 34/57 (59%)

Query: 24  QEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILP 80
           +EARLAIE IVIP  E  +LLPR   IV+ Q +LV  Y L +E         L+ILP
Sbjct: 561 EEARLAIERIVIPKKETTDLLPRPPRIVSLQGKLVRKYNLRSERKWRGDEMYLRILP 617



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,416,034
Number of extensions: 76624
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)