BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0186400 Os07g0186400|AK101850
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0186400 Bromo adjacent region domain containing protein 471 e-133
AK061201 471 e-133
Os03g0799600 Similar to ES43 like protein 360 e-100
Os09g0386500 Bromo adjacent region domain containing protein 320 5e-88
Os08g0421900 Bromo adjacent region domain containing protein 310 9e-85
>Os07g0186400 Bromo adjacent region domain containing protein
Length = 247
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/247 (92%), Positives = 228/247 (92%)
Query: 1 RNRQNSPSPRXXXXXXXXXXXXXXXXXXXMAKSRPPKRILESYTIKGSDKVIKPGDCVLM 60
RNRQNSPSPR MAKSRPPKRILESYTIKGSDKVIKPGDCVLM
Sbjct: 1 RNRQNSPSPRLLPTPNPSSHPLSPSPSRPMAKSRPPKRILESYTIKGSDKVIKPGDCVLM 60
Query: 61 RASDTSKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESMGGRRPFHGAKEVFLSDHYD 120
RASDTSKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESMGGRRPFHGAKEVFLSDHYD
Sbjct: 61 RASDTSKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESMGGRRPFHGAKEVFLSDHYD 120
Query: 121 VQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNP 180
VQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNP
Sbjct: 121 VQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNP 180
Query: 181 DDLMIQCEECSDWFHPSCIGMTIKDAKKLEHFFCQSCTAENGKMAENSHEATAQSEEKQV 240
DDLMIQCEECSDWFHPSCIGMTIKDAKKLEHFFCQSCTAENGKMAENSHEATAQSEEKQV
Sbjct: 181 DDLMIQCEECSDWFHPSCIGMTIKDAKKLEHFFCQSCTAENGKMAENSHEATAQSEEKQV 240
Query: 241 ESKRRRR 247
ESKRRRR
Sbjct: 241 ESKRRRR 247
>AK061201
Length = 247
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/247 (92%), Positives = 228/247 (92%)
Query: 1 RNRQNSPSPRXXXXXXXXXXXXXXXXXXXMAKSRPPKRILESYTIKGSDKVIKPGDCVLM 60
RNRQNSPSPR MAKSRPPKRILESYTIKGSDKVIKPGDCVLM
Sbjct: 1 RNRQNSPSPRLLPTPNPSSHPLSPSPSRPMAKSRPPKRILESYTIKGSDKVIKPGDCVLM 60
Query: 61 RASDTSKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESMGGRRPFHGAKEVFLSDHYD 120
RASDTSKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESMGGRRPFHGAKEVFLSDHYD
Sbjct: 61 RASDTSKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESMGGRRPFHGAKEVFLSDHYD 120
Query: 121 VQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNP 180
VQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNP
Sbjct: 121 VQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNP 180
Query: 181 DDLMIQCEECSDWFHPSCIGMTIKDAKKLEHFFCQSCTAENGKMAENSHEATAQSEEKQV 240
DDLMIQCEECSDWFHPSCIGMTIKDAKKLEHFFCQSCTAENGKMAENSHEATAQSEEKQV
Sbjct: 181 DDLMIQCEECSDWFHPSCIGMTIKDAKKLEHFFCQSCTAENGKMAENSHEATAQSEEKQV 240
Query: 241 ESKRRRR 247
ESKRRRR
Sbjct: 241 ESKRRRR 247
>Os03g0799600 Similar to ES43 like protein
Length = 218
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/219 (78%), Positives = 194/219 (88%), Gaps = 2/219 (0%)
Query: 30 MAKSRPP-KRILESYTIKGSDKVIKPGDCVLMRASDTSKPPYVARVEAIEAAGSRGTNVR 88
MAK+R P KR+LES+TIKG D VIKPGD VLM A D+SK PYVARVE IEA G + + V+
Sbjct: 1 MAKTRQPQKRVLESFTIKGPDGVIKPGDTVLMMAPDSSKKPYVARVEEIEATGPQASQVK 60
Query: 89 VRVRWYYRPEESMGGRRPFHGAKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAE 148
++VRWYYRPEES+GGRRPFHG+KEVFLSDHYD QSADTIEGKC VH+FR YTKL SV+AE
Sbjct: 61 IKVRWYYRPEESIGGRRPFHGSKEVFLSDHYDSQSADTIEGKCYVHTFRDYTKLRSVSAE 120
Query: 149 DFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCEECSDWFHPSCIGMTIKDAKK 208
DFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPD+LMIQCE+CSDWFHPSC+ +TIK+AKK
Sbjct: 121 DFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDNLMIQCEDCSDWFHPSCVEITIKEAKK 180
Query: 209 LEHFFCQSCTAENGKMAENSHEATAQSEEKQVESKRRRR 247
LEHF+C+SC AENGK + S+ AT QSEEK V+SKRRRR
Sbjct: 181 LEHFYCKSCIAENGKDLQKSNGATVQSEEK-VQSKRRRR 218
>Os09g0386500 Bromo adjacent region domain containing protein
Length = 216
Score = 320 bits (821), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 152/219 (69%), Positives = 181/219 (82%), Gaps = 4/219 (1%)
Query: 30 MAKSRPPKRILESYTIKGSDKVIKPGDCVLMRASDTSKPPYVARVEAIEAAGSRGTNVRV 89
MAK++ K+ +ESYTIKG+ K+++ GDCVLMRASDT K PYV RVE +E G RG+ VRV
Sbjct: 1 MAKTKQGKKDVESYTIKGTTKIVRVGDCVLMRASDTEKAPYVGRVERLETDG-RGS-VRV 58
Query: 90 RVRWYYRPEESMGGRRPFHGAKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAED 149
RVRWYYRPEES GGRR FHGAKE+FLSDH+D QSA TIEGKC VHSF++YTKLD+V ED
Sbjct: 59 RVRWYYRPEESKGGRRQFHGAKELFLSDHFDTQSAHTIEGKCVVHSFKNYTKLDNVGPED 118
Query: 150 FFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCEECSDWFHPSCIGMTIKDAKKL 209
FFCRFEYK+ATG+F PDR+AV+CKCEMPYNPDDLM+QCE C DWFHPSC+GMTI+ AKKL
Sbjct: 119 FFCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEQAKKL 178
Query: 210 EHFFCQSCTAENG-KMAENSHEATAQSEEKQVESKRRRR 247
+HF C C ENG K NS+ A++ S+ K VE K+R+R
Sbjct: 179 DHFLCADCVKENGTKRPSNSYPASSNSDSK-VEPKKRKR 216
>Os08g0421900 Bromo adjacent region domain containing protein
Length = 216
Score = 310 bits (793), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 144/218 (66%), Positives = 176/218 (80%), Gaps = 2/218 (0%)
Query: 30 MAKSRPPKRILESYTIKGSDKVIKPGDCVLMRASDTSKPPYVARVEAIEAAGSRGTNVRV 89
MAK++ KR ++SYTI G++KV++ GDCVLMR D+ PYVARVE +E G RG+ VRV
Sbjct: 1 MAKTKQGKRDVDSYTISGTNKVVRVGDCVLMRPVDSDNQPYVARVEKMELDG-RGS-VRV 58
Query: 90 RVRWYYRPEESMGGRRPFHGAKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAED 149
RVRWYYRPEES GGRR FHGAKE+FLSDH+D+QSA+TIEGKC VHSF++YTKLD+V ED
Sbjct: 59 RVRWYYRPEESKGGRRQFHGAKELFLSDHFDMQSANTIEGKCVVHSFKNYTKLDNVGPED 118
Query: 150 FFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCEECSDWFHPSCIGMTIKDAKKL 209
FFCRFEYK+ATG+F PDR+AV+CKCEMPYNPDDLM+QC++C DWFHPSC+ MTI+ AKKL
Sbjct: 119 FFCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCDDCKDWFHPSCMSMTIEQAKKL 178
Query: 210 EHFFCQSCTAENGKMAENSHEATAQSEEKQVESKRRRR 247
+HF C C ENG + A + E + ESKR+RR
Sbjct: 179 DHFVCSDCVKENGAKRPSHAYAGSTKYEPKAESKRQRR 216
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,375,090
Number of extensions: 329484
Number of successful extensions: 701
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 695
Number of HSP's successfully gapped: 5
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)