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Os07g0186400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromo adjacent region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0132) R2 : 0.245
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.337 (0.0278) R2dN8 : 0.316 R2N8 : 0.245
σ : 0.248
deviance : 28.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.79 0.161 12.2 0.31 0.231 0.48 -0.0108 0.0282 0.259 13.6 21.52 1617 -- --
11.75 0.16 12.2 0.306 0.238 0.48 -0.00928 -- 0.258 13.7 21.52 1507 -- --
11.75 0.16 12.2 0.318 0.238 0.483 -- 0.045 0.261 13.7 21.5 1507 -- --
11.75 0.16 12.2 0.306 0.238 0.48 -- -- 0.258 13.7 21.52 1507 -- --
15.04 0.181 12.2 0.304 -- 0.489 -- 0.0749 0.252 -- 21.6 1660 -- --
18.57 0.202 12.2 0.506 0.228 -- 0.023 -- 0.398 13.7 -- -- -- --
18.57 0.202 12.2 0.507 0.228 -- -- -- 0.398 13.6 -- -- -- --
15.04 0.181 12.2 0.291 -- 0.476 -- -- 0.253 -- 21.59 1666 -- --
13.67 0.172 12.2 -- 0.288 0.592 -- -- 0.209 13.8 21.2 2766 -- --
21.76 0.218 12.2 0.498 -- -- -- -- 0.393 -- -- -- -- --
25.35 0.236 12.2 -- 0.219 -- -- -- 0.341 13.6 -- -- -- --
17.03 0.192 12.3 -- -- 0.558 -- -- 0.196 -- 21.2 1719 -- --
28.29 0.248 12.2 -- -- -- -- -- 0.337 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.46 temperature 25.0 1440 < th dose dependent rect. 21 1
11 11.84 temperature 25.0 1440 < th dose dependent rect. 20 9
12 11.85 wind 1.0 43200 > th dose independent rect. 4 3
40 11.96 temperature 25.0 1440 < th dose dependent rect. 4 1
50 12.01 temperature 30.0 10 < th dose dependent rect. 19 23
54 12.04 temperature 15.0 1440 > th dose dependent rect. 4 1
74 12.08 temperature 20.0 1440 < th dose independent rect. 4 3
78 12.09 temperature 25.0 1440 < th dose dependent sin 12 NA
82 12.10 temperature 20.0 1440 < th dose independent rect. 5 1
95 12.12 wind 1.0 43200 < th dose dependent rect. 4 4
96 12.13 temperature 20.0 1440 > th dose independent rect. 4 3
102 12.14 temperature 30.0 10 < th dose dependent rect. 11 23
122 12.18 temperature 30.0 10 < th dose dependent rect. 23 23
130 12.19 temperature 30.0 10 < th dose dependent rect. 7 23
131 12.19 temperature 30.0 10 < th dose dependent rect. 13 23
132 12.20 temperature 20.0 1440 > th dose independent rect. 5 1
153 12.22 temperature 30.0 10 < th dose dependent no NA NA
157 12.22 temperature 15.0 1440 > th dose dependent rect. 21 9
199 12.28 temperature 30.0 10 < th dose dependent rect. 9 23
211 12.30 temperature 30.0 10 < th dose dependent rect. 15 23
228 12.34 wind 1.0 43200 < th dose independent rect. 4 4
267 12.36 temperature 30.0 10 < th dose dependent rect. 17 23
319 12.41 temperature 30.0 30 < th dose dependent rect. 21 23
320 12.42 temperature 20.0 4320 > th dose independent rect. 21 2
321 12.42 wind 1.0 43200 > th dose dependent rect. 1 1
372 12.49 temperature 20.0 1440 > th dose independent rect. 20 11
373 12.49 temperature 10.0 10 > th dose dependent no NA NA
413 12.52 temperature 30.0 10 < th dose dependent rect. 1 23
422 12.54 temperature 20.0 4320 < th dose independent rect. 21 2
424 12.54 temperature 20.0 1440 < th dose independent rect. 20 11
434 12.54 temperature 15.0 90 > th dose dependent rect. 5 23
550 12.65 temperature 20.0 1440 > th dose independent sin 9 NA
562 12.65 temperature 30.0 10 < th dose dependent rect. 3 23
609 12.69 temperature 20.0 10 > th dose dependent rect. 6 22
612 12.69 temperature 20.0 10 > th dose dependent rect. 13 23
646 12.72 temperature 20.0 1440 < th dose independent sin 9 NA
655 12.72 humidity 60.0 43200 < th dose dependent rect. 13 1
662 12.72 humidity 70.0 43200 < th dose dependent rect. 21 15
706 12.75 humidity 70.0 43200 > th dose independent rect. 19 1
714 12.75 temperature 25.0 1440 < th dose dependent no NA NA
789 12.78 humidity 70.0 43200 < th dose dependent rect. 2 10
795 12.78 humidity 60.0 43200 < th dose dependent rect. 11 22
804 12.79 humidity 70.0 43200 < th dose dependent rect. 4 8
827 12.80 temperature 25.0 1440 < th dose dependent rect. 1 23
828 12.80 temperature 25.0 1440 < th dose dependent rect. 4 23
841 12.81 humidity 70.0 43200 < th dose dependent rect. 8 4
863 12.82 humidity 70.0 43200 > th dose independent rect. 19 14
901 12.83 temperature 20.0 90 > th dose dependent rect. 13 23
909 12.84 humidity 70.0 43200 < th dose dependent sin 9 NA
928 12.85 precipitation 0.1 43200 > th dose independent rect. 9 1
929 12.85 precipitation 0.1 43200 < th dose independent rect. 9 1
939 12.85 precipitation 0.1 43200 > th dose dependent rect. 9 1
940 12.85 precipitation 0.1 43200 < th dose dependent rect. 9 1
950 12.85 temperature 20.0 90 > th dose dependent rect. 15 23
957 12.86 temperature 15.0 1440 > th dose dependent sin 10 NA
959 12.86 humidity 70.0 43200 < th dose dependent rect. 11 1
966 12.86 humidity 60.0 43200 < th dose dependent rect. 11 11
976 12.86 humidity 60.0 43200 < th dose dependent rect. 19 22