BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0186400 Os07g0186400|AK101850
(247 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22140.1 | chr4:11728556-11730230 REVERSE LENGTH=235 297 3e-81
AT4G39100.1 | chr4:18218298-18220134 REVERSE LENGTH=229 296 7e-81
AT4G04260.1 | chr4:2054636-2055849 FORWARD LENGTH=194 210 7e-55
AT4G12620.1 | chr4:7459812-7462253 REVERSE LENGTH=814 51 6e-07
>AT4G22140.1 | chr4:11728556-11730230 REVERSE LENGTH=235
Length = 234
Score = 297 bits (761), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 167/200 (83%), Gaps = 10/200 (5%)
Query: 30 MAKSRPP--------KRILESYTIKGSDKVIKPGDCVLMRASDTSKPPYVARVEAIEAAG 81
MAK+RP ++ L+SYTIKG++KV++ GDCVLMR SD KPPYVARVE IEA
Sbjct: 1 MAKTRPGVASKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADA 60
Query: 82 SRGTNVRVRVRWYYRPEESMGGRRPFHGAKEVFLSDHYDVQSADTIEGKCNVHSFRSYTK 141
NV+V RWYYRPEES+GGRR FHGAKE+FLSDH+DVQSA TIEGKC VH+F++YT+
Sbjct: 61 R--NNVKVHCRWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTR 118
Query: 142 LDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCEECSDWFHPSCIGM 201
L++V AED++CRFEYK+ATG+F PDR+AV+CKCEMPYNPDDLM+QCE C DW+HP+C+GM
Sbjct: 119 LENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGM 178
Query: 202 TIKDAKKLEHFFCQSCTAEN 221
TI++AKKL+HF C C++++
Sbjct: 179 TIEEAKKLDHFVCAECSSDD 198
>AT4G39100.1 | chr4:18218298-18220134 REVERSE LENGTH=229
Length = 228
Score = 296 bits (758), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 136/215 (63%), Positives = 172/215 (80%), Gaps = 3/215 (1%)
Query: 30 MAKSRPPKRILESYTIKGSDKVIKPGDCVLMRASDTSKPPYVARVEAIEAAGSRGTNVRV 89
M K + P++ L+SY +K +K I+ GD VLMR+S+ KP YVARVEAIE +RG++ +V
Sbjct: 1 MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIET-DARGSHAKV 59
Query: 90 RVRWYYRPEESMGGRRPFHGAKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAED 149
RVRWYYRPEES+GGRR FHGAKEVFLSDH+D QSADTIEGKC VHSF SYTKLDSV +D
Sbjct: 60 RVRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDD 119
Query: 150 FFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCEECSDWFHPSCIGMTIKDAKKL 209
FFCRFEY S TG+F PDR+ VFCKCEMPYNPDDLM+QCEECS+WFHPSCIG TI++AKK
Sbjct: 120 FFCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKP 179
Query: 210 EHFFCQSCTAENGKMAENSHEATAQSEEKQVESKR 244
++F+C+ C+ + + ++ +T+ + + +V KR
Sbjct: 180 DNFYCEECSPQQQNL--HNSNSTSNNRDAKVNGKR 212
>AT4G04260.1 | chr4:2054636-2055849 FORWARD LENGTH=194
Length = 193
Score = 210 bits (534), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 98/161 (60%), Positives = 124/161 (77%), Gaps = 3/161 (1%)
Query: 60 MRASDTSKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESMGGRRPFHGAKEVFLSDHY 119
MR SD K PYVARVE IEA NV+V RWYY PEES GGRR HGAKE+FLSDH+
Sbjct: 1 MRPSDAGKAPYVARVEKIEADAR--NNVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHF 58
Query: 120 DVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYN 179
DVQSA TIEGKC VH+F++YT+L++V ED++C F+YK+ATG+F PDR+AV+ KCEMPYN
Sbjct: 59 DVQSAHTIEGKCIVHTFKNYTRLENVGVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYN 118
Query: 180 PDDLMIQCEECSDWFHPSCIGMTIKDAKKLEHFFCQSCTAE 220
D+LM + C H +C+G+TI++AKKLEHF C C+++
Sbjct: 119 SDELM-ELLLCHYRVHLACVGVTIEEAKKLEHFVCVECSSD 158
>AT4G12620.1 | chr4:7459812-7462253 REVERSE LENGTH=814
Length = 813
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 60 MRASDTSKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESMGGRRPFHGAKEVFLSDHY 119
MR S + AR++ + G +R RWY PEE++ GR+P + +E++L++ +
Sbjct: 238 MREKLLSGDLWAARIDKLWKEVDDGV-YWIRARWYMIPEETVSGRQPHNLKRELYLTNDF 296
Query: 120 DVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSF 163
+ I C+V + ++K + + F C +EY SF
Sbjct: 297 ADIEMECILRHCSVKCPKEFSKASNDGDDVFLCEYEYDVHWRSF 340
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,344,669
Number of extensions: 217050
Number of successful extensions: 688
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 5
Length of query: 247
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 151
Effective length of database: 8,474,633
Effective search space: 1279669583
Effective search space used: 1279669583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)