FiT-DB / Search/ Help/ Sample detail

Os09g0386500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromo adjacent region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.0174) R2 : 0.158
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.339 (0.0366) R2dN8 : 0.205 R2N8 : 0.158
σ : 0.327
deviance : 49.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.09 0.2 13.8 -1.1 0.417 0.75 0.407 -2.64 -0.0229 0.592 20.87 2238 -- --
21.46 0.216 13.7 -0.516 0.463 0.777 0.189 -- 0.148 24 14.9 5495 -- --
18.73 0.202 13.8 -1.07 0.434 0.741 -- -2.48 -0.0132 0.657 20.7 2127 -- --
21.61 0.217 13.7 -0.527 0.464 0.816 -- -- 0.147 24 13.05 5513 -- --
26.68 0.241 13.8 -1.02 -- 0.957 -- -2.62 -0.011 -- 21.61 982 -- --
32.76 0.268 13.7 -0.122 0.502 -- 0.258 -- 0.32 0.158 -- -- -- --
33.05 0.269 13.7 -0.132 0.501 -- -- -- 0.319 0.108 -- -- -- --
30.92 0.259 13.7 -0.401 -- 0.917 -- -- 0.154 -- 17.38 960 -- --
25.85 0.237 13.7 -- 0.488 0.63 -- -- 0.239 0.0968 8.466 1607 -- --
48.85 0.327 13.7 -0.116 -- -- -- -- 0.326 -- -- -- -- --
33.5 0.271 13.7 -- 0.499 -- -- -- 0.334 0.0933 -- -- -- --
34.53 0.274 13.7 -- -- 0.695 -- -- 0.218 -- 20.41 969 -- --
49.21 0.327 13.7 -- -- -- -- -- 0.339 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.88 radiation 1 43200 < th dose independent rect. 18 1
4 16.88 radiation 1 43200 < th dose independent rect. 18 7
12 17.04 wind 5 43200 < th dose independent rect. 11 5
13 17.05 wind 5 43200 > th dose independent rect. 11 5
17 17.10 radiation 1 43200 > th dose independent rect. 18 1
19 17.10 wind 5 43200 > th dose independent rect. 12 3
28 17.12 wind 5 43200 > th dose independent rect. 10 7
35 17.17 humidity 70 43200 > th dose independent rect. 8 1
38 17.17 wind 3 43200 > th dose dependent rect. 12 3
39 17.18 humidity 70 43200 < th dose independent rect. 8 1
40 17.18 wind 3 43200 > th dose dependent rect. 11 5
41 17.18 radiation 1 43200 < th dose dependent rect. 18 11
55 17.25 wind 5 43200 < th dose independent rect. 10 11
79 17.32 radiation 1 43200 < th dose dependent rect. 9 1
91 17.37 wind 7 43200 > th dose independent rect. 5 1
94 17.38 radiation 1 43200 > th dose independent rect. 8 2
95 17.38 radiation 1 43200 < th dose independent rect. 8 2
110 17.40 radiation 1 43200 < th dose dependent rect. 18 1
111 17.40 radiation 1 43200 < th dose dependent rect. 18 7
112 17.40 radiation 1 43200 < th dose dependent rect. 18 9
121 17.41 wind 9 43200 < th dose dependent rect. 11 4
128 17.42 wind 5 43200 < th dose independent sin 21 NA
133 17.43 wind 5 43200 > th dose independent sin 21 NA
151 17.45 humidity 60 43200 > th dose independent rect. 2 10
165 17.46 wind 9 43200 < th dose dependent rect. 13 1
173 17.47 humidity 60 43200 < th dose independent rect. 2 10
180 17.49 radiation 20 43200 < th dose independent rect. 8 1
188 17.50 temperature 15 43200 > th dose independent rect. 2 1
198 17.51 temperature 15 43200 < th dose independent rect. 2 1
199 17.51 radiation 20 43200 < th dose independent rect. 6 1
200 17.51 humidity 60 43200 > th dose independent rect. 6 6
203 17.51 radiation 20 43200 < th dose independent rect. 17 14
223 17.53 radiation 20 43200 < th dose independent rect. 23 8
231 17.53 humidity 70 43200 < th dose dependent rect. 8 3
234 17.54 atmosphere 1005 43200 < th dose independent rect. 16 1
243 17.54 humidity 60 43200 < th dose dependent rect. 11 2
247 17.55 atmosphere 1005 43200 > th dose independent rect. 16 1
251 17.55 humidity 60 43200 < th dose independent rect. 6 6
266 17.56 humidity 60 43200 > th dose independent rect. 19 17
267 17.56 humidity 60 43200 < th dose independent rect. 19 17
270 17.56 radiation 1 43200 < th dose dependent rect. 18 17
271 17.57 temperature 25 4320 < th dose independent rect. 16 2
285 17.57 wind 3 43200 > th dose dependent rect. 10 11
287 17.58 temperature 25 4320 > th dose independent rect. 16 2
307 17.59 wind 7 43200 < th dose independent rect. 5 1
356 17.61 radiation 1 43200 < th dose dependent rect. 4 7
384 17.63 temperature 15 43200 > th dose independent rect. 10 2
385 17.63 temperature 15 43200 < th dose independent rect. 10 2
402 17.64 atmosphere 1005 43200 < th dose independent rect. 18 1
441 17.65 atmosphere 1010 43200 < th dose independent rect. 10 1
472 17.67 temperature 25 4320 > th dose independent rect. 11 1
483 17.67 temperature 25 4320 < th dose independent rect. 15 4
544 17.69 temperature 25 4320 < th dose independent rect. 11 1
545 17.69 atmosphere 1010 43200 > th dose independent rect. 9 1
587 17.70 atmosphere 1005 43200 > th dose independent rect. 11 8
593 17.70 temperature 15 43200 < th dose independent rect. 24 12
595 17.70 radiation 1 43200 < th dose dependent sin 7 NA
644 17.72 atmosphere 1005 43200 < th dose independent rect. 11 8
657 17.72 temperature 15 43200 < th dose dependent rect. 2 1
707 17.73 temperature 15 43200 > th dose independent rect. 24 12
724 17.73 radiation 10 43200 < th dose dependent rect. 4 1
732 17.74 atmosphere 1010 43200 < th dose independent rect. 22 1
752 17.74 atmosphere 1010 43200 < th dose independent rect. 18 17
760 17.74 temperature 15 43200 < th dose dependent rect. 24 5
788 17.75 atmosphere 1010 43200 < th dose independent rect. 17 6
807 17.75 atmosphere 1010 43200 < th dose independent rect. 22 14
818 17.75 wind 3 43200 > th dose dependent sin 21 NA
839 17.75 radiation 1 43200 < th dose dependent rect. 7 22
875 17.76 atmosphere 1010 43200 < th dose independent rect. 1 11
878 17.76 atmosphere 1010 43200 < th dose independent rect. 23 12
886 17.76 atmosphere 1010 43200 < th dose independent rect. 18 14
909 17.76 radiation 10 43200 < th dose dependent rect. 2 3
917 17.76 wind 5 43200 > th dose dependent rect. 5 13
921 17.77 atmosphere 1010 43200 < th dose independent sin 9 NA
985 17.77 atmosphere 1010 43200 > th dose independent rect. 17 18