BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0181500 Os07g0181500|AK072431
         (213 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0181500  Protein of unknown function DUF506, plant fami...   190   7e-49
Os03g0796600  Protein of unknown function DUF506, plant fami...   108   2e-24

>Os07g0181500 Protein of unknown function DUF506, plant family protein
          Length = 213

 Score =  190 bits (482), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 113/213 (53%), Positives = 113/213 (53%)

Query: 1   MPLRLPCAMETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MPLRLPCAMET                                                 
Sbjct: 1   MPLRLPCAMETRPPRAAAPAPARVSRFRRLLVRVSAEPERAGGGGGGEVREKEEKAAEME 60

Query: 61  XXSVGLDRMVLSFMEDSAAAAVERPPRGRCGSCFNXXXXXXXXXXXXXLPXXXXXXXXXX 120
             SVGLDRMVLSFMEDSAAAAVERPPRGRCGSCFN             LP          
Sbjct: 61  VGSVGLDRMVLSFMEDSAAAAVERPPRGRCGSCFNGGGDGSDDEEFDFLPSDSSATAAAS 120

Query: 121 XXXXXXXXXXXLKGLVQSASMAERNLLADASRIAERCRKGGKKKADVRCXXXXXXXXXXX 180
                      LKGLVQSASMAERNLLADASRIAERCRKGGKKKADVRC           
Sbjct: 121 AAAAAGDALDALKGLVQSASMAERNLLADASRIAERCRKGGKKKADVRCAVADGLAALGY 180

Query: 181 XXXXCKSRWDKTPSYPAGKLNLAPNSMLLNRRR 213
               CKSRWDKTPSYPAGKLNLAPNSMLLNRRR
Sbjct: 181 DAAVCKSRWDKTPSYPAGKLNLAPNSMLLNRRR 213



>Os03g0796600 Protein of unknown function DUF506, plant family protein
          Length = 405

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 76/137 (55%), Gaps = 5/137 (3%)

Query: 63  SVGLDRMVLSFMEDSAAAAVERPPRGRCGSCFNXXXXXXXXXXXXXLPXXXXXXXXXXXX 122
           SVGLDRMVLSFMEDSAA  VERP RGRC +CFN                           
Sbjct: 83  SVGLDRMVLSFMEDSAA--VERPQRGRC-NCFNGSNYEESDDEEGFF--LPSDHSSASAP 137

Query: 123 XXXXXXXXXLKGLVQSASMAERNLLADASRIAERCRKGGKKKADVRCXXXXXXXXXXXXX 182
                    LKGLVQSAS+AERNLLADASRIAERC KG K KA+ R              
Sbjct: 138 AAAGDALESLKGLVQSASVAERNLLADASRIAERCCKGSKGKAECRRAVADGLRALGYDA 197

Query: 183 XXCKSRWDKTPSYPAGK 199
             C+SRW+KT SYPAG+
Sbjct: 198 AVCRSRWEKTSSYPAGE 214



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,784,589
Number of extensions: 77551
Number of successful extensions: 227
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)