BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0179500 Os07g0179500|Os07g0179500
         (300 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0179500  Conserved hypothetical protein                      625   e-180
Os03g0796400  ENT domain containing protein                        99   4e-21

>Os07g0179500 Conserved hypothetical protein
          Length = 300

 Score =  625 bits (1613), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 300/300 (100%), Positives = 300/300 (100%)

Query: 1   MPAVKKDDVRTHRPVGMRKGRWVLGDITEVLDRNSWRLGKIAKVLKDDYFVIRVTGCMQM 60
           MPAVKKDDVRTHRPVGMRKGRWVLGDITEVLDRNSWRLGKIAKVLKDDYFVIRVTGCMQM
Sbjct: 1   MPAVKKDDVRTHRPVGMRKGRWVLGDITEVLDRNSWRLGKIAKVLKDDYFVIRVTGCMQM 60

Query: 61  REFHISCLRFPHAYHGKQSAVIDKVRKQSEKQTQHVDQTFHHSKMVMEDDHHSNEANDHI 120
           REFHISCLRFPHAYHGKQSAVIDKVRKQSEKQTQHVDQTFHHSKMVMEDDHHSNEANDHI
Sbjct: 61  REFHISCLRFPHAYHGKQSAVIDKVRKQSEKQTQHVDQTFHHSKMVMEDDHHSNEANDHI 120

Query: 121 TKRHKAINLCPSSSARNVKKKLELTRMPPDDSIPGASKKRRVDAHEVHRQTRKPQPLKVS 180
           TKRHKAINLCPSSSARNVKKKLELTRMPPDDSIPGASKKRRVDAHEVHRQTRKPQPLKVS
Sbjct: 121 TKRHKAINLCPSSSARNVKKKLELTRMPPDDSIPGASKKRRVDAHEVHRQTRKPQPLKVS 180

Query: 181 AKNDIHRDLFCRPSSERYNDLAKNNLTKRKPDSIVRPPSQMPLQVREENECSVASCSVNF 240
           AKNDIHRDLFCRPSSERYNDLAKNNLTKRKPDSIVRPPSQMPLQVREENECSVASCSVNF
Sbjct: 181 AKNDIHRDLFCRPSSERYNDLAKNNLTKRKPDSIVRPPSQMPLQVREENECSVASCSVNF 240

Query: 241 SEHSMNTDTQSVGVRNSFPDDAMSSCPSMLRQESDNVHGCDFKMDVHELELQAYQSTIKI 300
           SEHSMNTDTQSVGVRNSFPDDAMSSCPSMLRQESDNVHGCDFKMDVHELELQAYQSTIKI
Sbjct: 241 SEHSMNTDTQSVGVRNSFPDDAMSSCPSMLRQESDNVHGCDFKMDVHELELQAYQSTIKI 300



>Os03g0796400 ENT domain containing protein
          Length = 298

 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 62/80 (77%), Gaps = 2/80 (2%)

Query: 7   DDVRTHRP-VGMRKGRWVLGDITEVLDRNSWRLGKIAKVLKDDYFVIRVTGCMQMREFHI 65
           D VR ++P V   + RW++GD+TEVLDRN+W+LGKIAK+LK++YFVIR+  C+Q++EFHI
Sbjct: 34  DIVRANQPAVVQTRCRWIIGDVTEVLDRNTWKLGKIAKMLKNNYFVIRLADCIQLKEFHI 93

Query: 66  SCLRFPHAYHG-KQSAVIDK 84
           S LR P + H   Q +V DK
Sbjct: 94  SSLRVPASPHSNNQYSVADK 113



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,795,669
Number of extensions: 440460
Number of successful extensions: 1294
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1294
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)