BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0178700 Os07g0178700|Os07g0178700
         (200 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0178700  Similar to Low molecular mass early light-indu...   157   7e-39
Os07g0178800  Similar to Low molecular mass early light-indu...   153   6e-38
Os01g0246400  Similar to Low molecular mass early light-indu...   146   7e-36
Os03g0417400                                                       75   2e-14
Os02g0265550  Conserved hypothetical protein                       71   6e-13

>Os07g0178700 Similar to Low molecular mass early light-inducible protein HV90,
           chloroplast precursor (ELIP)
          Length = 200

 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 93/152 (61%)

Query: 49  QAEPEVEPTKEEXXXXXXXXXXXXXXXXXXXXXXXXXXGLWDVLAFSGPAPERINGRLAM 108
           QAEPEVEPTKEE                          GLWDVLAFSGPAPERINGRLAM
Sbjct: 49  QAEPEVEPTKEEAATSSSPTPTPSPAAAAPRAKPAASTGLWDVLAFSGPAPERINGRLAM 108

Query: 109 VGFVSALAVEASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGESAEARSGGVMS 168
           VGFVSALAVEASR                                 RGESAEARSGGVMS
Sbjct: 109 VGFVSALAVEASRGGGLLEQAGSGGGLAWFAATAAVLSAASLVPLLRGESAEARSGGVMS 168

Query: 169 ADAELWNGRFAMLGLVALAFTEFLTGSPLVNV 200
           ADAELWNGRFAMLGLVALAFTEFLTGSPLVNV
Sbjct: 169 ADAELWNGRFAMLGLVALAFTEFLTGSPLVNV 200



>Os07g0178800 Similar to Low molecular mass early light-inducible protein HV90,
           chloroplast precursor (ELIP)
          Length = 192

 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 92/152 (60%), Gaps = 2/152 (1%)

Query: 49  QAEPEVEPTKEEXXXXXXXXXXXXXXXXXXXXXXXXXXGLWDVLAFSGPAPERINGRLAM 108
           QAEPEVEPTKEE                          GLWDVLAFSGPAPERINGRLAM
Sbjct: 43  QAEPEVEPTKEETATSSSPTPSPAAAAPRAKPAAST--GLWDVLAFSGPAPERINGRLAM 100

Query: 109 VGFVSALAVEASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGESAEARSGGVMS 168
           VGFVSALAVEASR                                 RGESAEARSGGVMS
Sbjct: 101 VGFVSALAVEASRGGGLLEQAGSGDGLAWFAATATVLSAASLVPLLRGESAEARSGGVMS 160

Query: 169 ADAELWNGRFAMLGLVALAFTEFLTGSPLVNV 200
           ADAELWNGRFAMLGLVALAFTEFLTGSP VNV
Sbjct: 161 ADAELWNGRFAMLGLVALAFTEFLTGSPFVNV 192



>Os01g0246400 Similar to Low molecular mass early light-inducible protein HV90,
           chloroplast precursor (ELIP)
          Length = 202

 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/157 (57%), Positives = 92/157 (58%), Gaps = 5/157 (3%)

Query: 49  QAEPEVEPTKEEXXXXXXXXXXXXXXXXXXXXXXXXX-----XGLWDVLAFSGPAPERIN 103
           Q+EPEVEPTKEE                                LWDVLAFSGPAPERIN
Sbjct: 46  QSEPEVEPTKEETATSSSSPSPATTPTPSPAAAAPKAKPAASTKLWDVLAFSGPAPERIN 105

Query: 104 GRLAMVGFVSALAVEASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGESAEARS 163
           GRLAMVGFVSALAVEASR                                 RGE+AEARS
Sbjct: 106 GRLAMVGFVSALAVEASRGGGLLDQAGSWSGLAWFAATAAVLSAASLVPLLRGETAEARS 165

Query: 164 GGVMSADAELWNGRFAMLGLVALAFTEFLTGSPLVNV 200
           GGVMSADAELWNGRFAMLGLVALAFTEFLTGSPLVNV
Sbjct: 166 GGVMSADAELWNGRFAMLGLVALAFTEFLTGSPLVNV 202



>Os03g0417400 
          Length = 159

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 49  QAEPEVEPTKEEXXXXXXXXXXXXXXXXXXXXXXXXXXGLWDVLAFSGPAPERINGRLAM 108
           QAEPEVEPTKEE                          GLWDVLAFSGPA ERINGRLAM
Sbjct: 49  QAEPEVEPTKEETITSTPSPVAAAPKAKPAAST-----GLWDVLAFSGPATERINGRLAM 103

Query: 109 VGFVSALAVEASR 121
           VGFV  LAVEASR
Sbjct: 104 VGFVPVLAVEASR 116



>Os02g0265550 Conserved hypothetical protein
          Length = 139

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 45/73 (61%)

Query: 49  QAEPEVEPTKEEXXXXXXXXXXXXXXXXXXXXXXXXXXGLWDVLAFSGPAPERINGRLAM 108
           Q EP+VEPTKEE                          GLWDVLAFSGPAPE INGRLAM
Sbjct: 49  QTEPDVEPTKEETTTSSTPTPTPSPAAAAPKAKPAASTGLWDVLAFSGPAPEPINGRLAM 108

Query: 109 VGFVSALAVEASR 121
           VGFVSALAVEASR
Sbjct: 109 VGFVSALAVEASR 121



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,007,908
Number of extensions: 58546
Number of successful extensions: 165
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 5
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)