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Os01g0246400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Low molecular mass early light-inducible protein HV90, chloroplast precursor (ELIP).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.4 (0.0626) R2 : 0.702
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.56 (0.21) R2dC : 0.173 R2C : 0.406
β3 : -2.27 (0.169) R2dE : 0.212 R2E : 0.475
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.15 (0.133) R2dN8 : 0.0644 R2N8 : 0.0667
σ : 1.17
deviance : 636.06
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_____
C
peak time of C : 8.53
E
wheather : temperature
threshold : 19.83
memory length : 75
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.8
open length of G : 9.47

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
625.47 1.18 15.3 0.42 2.64 -2.23 1.77 1.07 -1.08 8.57 19.9 74 17.9 9.4
628.45 1.17 15.4 0.36 2.56 -2.28 1.03 -- -1.1 8.54 19.9 74 17.8 9.47
632.08 1.17 15.3 0.471 2.56 -2.23 -- 0.393 -1.07 8.56 19.8 72 17.8 9.4
631.58 1.17 15.4 0.419 2.52 -2.31 -- -- -1.1 8.51 19.72 73 17.8 9.45
803.39 1.32 15.4 0.737 -- -3.54 -- -0.354 -0.835 -- 19 28 17.8 9.87
809.07 1.33 15.4 0.074 4.47 -- 1.59 -- -1.36 9.48 -- -- -- --
818.36 1.34 15.4 0.133 4.46 -- -- -- -1.36 9.48 -- -- -- --
797.85 1.32 15.4 0.633 -- -3.63 -- -- -0.992 -- 19.1 32 17.7 9.86
636.06 1.17 15.4 -- 2.56 -2.27 -- -- -1.15 8.53 19.83 75 17.8 9.47
1988.07 2.08 15.5 0.103 -- -- -- -- -1.35 -- -- -- -- --
818.83 1.34 15.4 -- 4.46 -- -- -- -1.37 9.48 -- -- -- --
676.44 1.21 15.4 -- -- -4.05 -- -- -1.32 -- 19.4 276 14.7 9.87
1988.35 2.08 15.5 -- -- -- -- -- -1.36 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 632.77 temperature 20 90 > th dose independent rect. 18 9
2 637.49 temperature 20 90 > th dose independent rect. 18 17
4 641.07 temperature 20 270 > th dose independent rect. 16 9
24 662.57 temperature 15 90 > th dose dependent rect. 18 9
31 665.11 temperature 20 270 > th dose independent rect. 16 19
48 671.04 radiation 1 90 > th dose independent sin 19 NA
50 671.41 radiation 1 30 < th dose dependent sin 17 NA
52 671.48 radiation 1 90 < th dose independent sin 19 NA
55 671.71 radiation 1 90 < th dose dependent sin 19 NA
70 674.81 temperature 10 270 > th dose dependent rect. 17 17
96 679.78 temperature 10 270 > th dose dependent rect. 16 9
107 681.80 radiation 10 720 < th dose independent rect. 14 5
118 682.96 temperature 20 1440 > th dose independent rect. 6 1
120 683.38 radiation 10 720 < th dose dependent rect. 11 8
137 685.53 temperature 20 1440 > th dose independent rect. 3 1
144 685.96 temperature 20 1440 < th dose independent rect. 3 1
152 686.53 temperature 20 1440 < th dose independent rect. 6 1
172 688.41 radiation 1 90 > th dose independent rect. 11 19
193 690.46 radiation 1 90 > th dose independent rect. 11 8
205 690.82 temperature 20 90 > th dose independent sin 14 NA
209 691.09 temperature 20 1440 > th dose independent rect. 24 9
217 691.40 temperature 20 1440 < th dose independent rect. 24 9
218 691.44 temperature 20 270 > th dose independent rect. 18 2
233 691.90 wind 3 43200 < th dose dependent rect. 6 1
248 692.25 temperature 20 90 < th dose independent rect. 12 17
252 692.32 temperature 20 90 > th dose independent rect. 7 16
280 693.43 temperature 20 90 < th dose independent rect. 15 14
284 693.55 temperature 20 1440 > th dose independent sin 8 NA
293 693.77 temperature 20 90 < th dose independent sin 15 NA
301 694.03 atmosphere 1015 90 < th dose dependent rect. 18 5
316 694.30 temperature 20 1440 < th dose independent sin 8 NA
319 694.32 wind 3 43200 < th dose dependent rect. 1 1
366 695.24 temperature 30 270 < th dose dependent rect. 20 9
381 695.50 temperature 15 10 > th dose dependent rect. 19 17
391 695.69 temperature 20 1440 < th dose independent rect. 18 13
414 696.04 atmosphere 1015 90 < th dose independent rect. 18 17
442 696.49 atmosphere 1015 270 < th dose independent rect. 16 19
510 697.40 humidity 80 270 < th dose independent rect. 11 5
541 697.70 wind 3 43200 < th dose dependent rect. 21 10
566 698.03 radiation 10 1440 > th dose independent rect. 11 1
620 698.67 wind 9 14400 > th dose independent rect. 10 1
636 698.85 wind 1 43200 < th dose dependent rect. 12 1
640 698.91 radiation 1 90 < th dose independent rect. 7 16
671 699.25 radiation 20 4320 > th dose dependent rect. 16 16
710 699.68 humidity 80 1440 < th dose independent rect. 7 7
712 699.68 wind 3 14400 < th dose dependent rect. 23 7
718 699.79 radiation 1 90 < th dose independent rect. 11 12
771 700.42 wind 3 14400 < th dose dependent rect. 3 3
781 700.50 wind 3 14400 < th dose dependent rect. 1 5
786 700.52 wind 3 43200 < th dose dependent rect. 21 16
790 700.58 wind 9 14400 < th dose independent rect. 10 1
803 700.74 radiation 1 90 < th dose dependent rect. 7 16
824 701.00 radiation 10 720 < th dose independent rect. 15 12
889 701.58 wind 3 43200 < th dose independent rect. 6 1
898 701.62 temperature 20 1440 < th dose dependent rect. 3 2
922 701.92 radiation 1 90 < th dose dependent rect. 11 12
927 701.96 wind 3 43200 > th dose independent rect. 6 1
951 702.16 wind 3 43200 < th dose dependent sin 9 NA
963 702.33 atmosphere 1015 270 < th dose dependent rect. 18 2
972 702.48 wind 3 43200 < th dose independent rect. 1 2
989 702.64 temperature 20 1440 > th dose independent no NA NA