BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0246400 Os01g0246400|AK062972
         (202 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0246400  Similar to Low molecular mass early light-indu...   189   1e-48
Os07g0178800  Similar to Low molecular mass early light-indu...   163   7e-41
Os07g0178700  Similar to Low molecular mass early light-indu...   161   3e-40
Os02g0265550  Conserved hypothetical protein                       75   4e-14
Os03g0417400                                                       72   3e-13

>Os01g0246400 Similar to Low molecular mass early light-inducible protein HV90,
           chloroplast precursor (ELIP)
          Length = 202

 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 115/202 (56%)

Query: 1   MAAATMALSSSFXXXXXXXXXXPWRGXXXXXXXXXXXXXXXXXXXQSEPEVXXXXXXXXX 60
           MAAATMALSSSF          PWRG                   QSEPEV         
Sbjct: 1   MAAATMALSSSFAVAAAAAGGAPWRGVVSAGRAAPRRRVALVVRAQSEPEVEPTKEETAT 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWDVLAFSGPAPERINGRLAMVGFVSALAVE 120
                                        LWDVLAFSGPAPERINGRLAMVGFVSALAVE
Sbjct: 61  SSSSPSPATTPTPSPAAAAPKAKPAASTKLWDVLAFSGPAPERINGRLAMVGFVSALAVE 120

Query: 121 ASRGGGLLDQAGSWSGXXXXXXXXXXXXXXXXXXXXRGETAEARSGGVMSADAELWNGRF 180
           ASRGGGLLDQAGSWSG                    RGETAEARSGGVMSADAELWNGRF
Sbjct: 121 ASRGGGLLDQAGSWSGLAWFAATAAVLSAASLVPLLRGETAEARSGGVMSADAELWNGRF 180

Query: 181 AMLGLVALAFTEFLTGSPLVNV 202
           AMLGLVALAFTEFLTGSPLVNV
Sbjct: 181 AMLGLVALAFTEFLTGSPLVNV 202



>Os07g0178800 Similar to Low molecular mass early light-inducible protein HV90,
           chloroplast precursor (ELIP)
          Length = 192

 Score =  163 bits (413), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 90/113 (79%)

Query: 90  LWDVLAFSGPAPERINGRLAMVGFVSALAVEASRGGGLLDQAGSWSGXXXXXXXXXXXXX 149
           LWDVLAFSGPAPERINGRLAMVGFVSALAVEASRGGGLL+QAGS  G             
Sbjct: 80  LWDVLAFSGPAPERINGRLAMVGFVSALAVEASRGGGLLEQAGSGDGLAWFAATATVLSA 139

Query: 150 XXXXXXXRGETAEARSGGVMSADAELWNGRFAMLGLVALAFTEFLTGSPLVNV 202
                  RGE+AEARSGGVMSADAELWNGRFAMLGLVALAFTEFLTGSP VNV
Sbjct: 140 ASLVPLLRGESAEARSGGVMSADAELWNGRFAMLGLVALAFTEFLTGSPFVNV 192



>Os07g0178700 Similar to Low molecular mass early light-inducible protein HV90,
           chloroplast precursor (ELIP)
          Length = 200

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 91/113 (80%)

Query: 90  LWDVLAFSGPAPERINGRLAMVGFVSALAVEASRGGGLLDQAGSWSGXXXXXXXXXXXXX 149
           LWDVLAFSGPAPERINGRLAMVGFVSALAVEASRGGGLL+QAGS  G             
Sbjct: 88  LWDVLAFSGPAPERINGRLAMVGFVSALAVEASRGGGLLEQAGSGGGLAWFAATAAVLSA 147

Query: 150 XXXXXXXRGETAEARSGGVMSADAELWNGRFAMLGLVALAFTEFLTGSPLVNV 202
                  RGE+AEARSGGVMSADAELWNGRFAMLGLVALAFTEFLTGSPLVNV
Sbjct: 148 ASLVPLLRGESAEARSGGVMSADAELWNGRFAMLGLVALAFTEFLTGSPLVNV 200



>Os02g0265550 Conserved hypothetical protein
          Length = 139

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 41/47 (87%)

Query: 90  LWDVLAFSGPAPERINGRLAMVGFVSALAVEASRGGGLLDQAGSWSG 136
           LWDVLAFSGPAPE INGRLAMVGFVSALAVEASR G LL++A S  G
Sbjct: 88  LWDVLAFSGPAPEPINGRLAMVGFVSALAVEASRSGELLEEASSGGG 134



>Os03g0417400 
          Length = 159

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 39/47 (82%)

Query: 90  LWDVLAFSGPAPERINGRLAMVGFVSALAVEASRGGGLLDQAGSWSG 136
           LWDVLAFSGPA ERINGRLAMVGFV  LAVEASR G LL++A S  G
Sbjct: 83  LWDVLAFSGPATERINGRLAMVGFVPVLAVEASRDGELLEEATSRGG 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,760,564
Number of extensions: 95483
Number of successful extensions: 284
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 5
Length of query: 202
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,023,257
Effective search space: 1274465242
Effective search space used: 1274465242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)