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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0178700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Low molecular mass early light-inducible protein HV90, chloroplast precursor (ELIP).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.5 (0.0867) R2 : 0.738
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.71 (0.304) R2dC : 0.178 R2C : 0.452
β3 : -3.85 (0.281) R2dE : 0.224 R2E : 0.522
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.42 (0.184) R2dN8 : 0.0452 R2N8 : 0.0508
σ : 1.63
deviance : 1219.53
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_____
C
peak time of C : 9.96
E
wheather : temperature
threshold : 20.95
memory length : 161
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.7
open length of G : 8.41

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1224.77 1.64 14.5 0.198 3.78 -3.5 2.55 1.33 -1.36 10.2 20.78 103 17.8 8.82
1202.94 1.62 14.5 0.0268 3.87 -3.76 2.26 -- -1.38 9.95 20.9 152 17.9 8.33
1242.47 1.64 14.5 0.223 3.75 -3.56 -- -0.0464 -1.3 10.3 20.71 106 17.8 8.92
1219.54 1.63 14.5 0.0856 3.67 -3.85 -- -- -1.39 9.93 20.95 158 17.7 8.45
1644.56 1.89 14.6 1.29 -- -4.56 -- -0.589 -0.715 -- 19.48 187 16.3 10.3
1673.9 1.92 14.5 -0.148 6.68 -- 2.48 -- -1.77 10.3 -- -- -- --
1698.7 1.93 14.5 -0.0505 6.67 -- -- -- -1.76 10.3 -- -- -- --
1411.71 1.75 15 1.74 -- -6.39 -- -- -1.7 -- 19.2 350 14.5 10.2
1219.53 1.63 14.5 -- 3.71 -3.85 -- -- -1.42 9.96 20.95 161 17.7 8.41
4410.31 3.1 14.7 -0.155 -- -- -- -- -1.78 -- -- -- -- --
1698.77 1.93 14.5 -- 6.67 -- -- -- -1.76 10.3 -- -- -- --
1344.25 1.71 14.6 -- -- -6.78 -- -- -1.45 -- 19.4 365 14.6 10
4410.94 3.1 14.7 -- -- -- -- -- -1.77 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1241.67 temperature 20 90 > th dose independent rect. 18 9
2 1258.85 temperature 20 270 > th dose independent rect. 16 9
16 1306.88 temperature 20 90 > th dose independent rect. 18 19
37 1333.01 temperature 15 270 > th dose dependent rect. 17 8
43 1342.92 radiation 10 720 < th dose dependent rect. 11 8
51 1346.54 radiation 10 720 < th dose dependent rect. 13 6
62 1350.86 radiation 10 720 < th dose independent rect. 14 5
77 1360.71 temperature 20 90 > th dose independent rect. 7 20
114 1377.62 humidity 90 720 < th dose dependent rect. 12 12
122 1378.99 humidity 90 720 < th dose dependent rect. 12 19
137 1381.78 humidity 90 720 < th dose dependent rect. 12 4
176 1390.32 radiation 10 1440 > th dose independent rect. 11 1
181 1390.60 temperature 10 270 > th dose dependent rect. 18 16
190 1391.37 humidity 80 720 > th dose independent rect. 12 1
208 1394.96 humidity 50 720 > th dose dependent rect. 9 19
211 1395.25 humidity 80 720 > th dose dependent rect. 12 1
216 1395.64 humidity 80 1440 < th dose independent rect. 6 9
220 1395.86 humidity 50 720 > th dose dependent rect. 7 21
250 1399.92 humidity 50 720 > th dose dependent rect. 11 17
261 1400.91 humidity 80 1440 > th dose independent rect. 6 9
287 1403.88 humidity 50 720 > th dose dependent rect. 14 5
292 1404.23 radiation 10 720 < th dose independent rect. 14 13
299 1404.65 temperature 20 90 < th dose independent sin 13 NA
301 1404.70 humidity 80 720 > th dose independent rect. 7 14
321 1406.13 humidity 90 720 < th dose dependent sin 19 NA
325 1406.29 humidity 60 720 > th dose dependent rect. 11 8
335 1406.66 temperature 20 90 > th dose independent sin 14 NA
345 1406.83 radiation 10 720 < th dose independent rect. 15 1
362 1407.66 radiation 10 1440 < th dose dependent rect. 11 13
363 1407.72 radiation 10 1440 < th dose dependent rect. 11 16
416 1409.81 temperature 20 90 < th dose independent rect. 15 14
428 1410.37 humidity 60 720 > th dose dependent rect. 9 12
430 1410.56 humidity 50 720 > th dose dependent rect. 7 14
432 1410.73 temperature 20 90 < th dose independent rect. 17 12
448 1411.55 humidity 80 1440 > th dose independent rect. 11 3
462 1412.29 temperature 15 10 > th dose dependent rect. 19 8
470 1412.77 temperature 20 90 < th dose independent rect. 13 16
491 1413.63 radiation 1 90 < th dose independent sin 15 NA
497 1413.83 humidity 70 720 > th dose independent rect. 14 5
502 1413.98 radiation 1 90 > th dose independent sin 15 NA
511 1414.58 temperature 20 10 < th dose independent sin 12 NA
536 1415.23 humidity 50 720 > th dose dependent sin 20 NA
545 1415.42 humidity 80 720 > th dose independent rect. 11 10
594 1417.19 humidity 50 720 > th dose dependent rect. 24 21
595 1417.26 radiation 10 1440 < th dose dependent rect. 11 3
603 1417.55 humidity 80 720 < th dose independent rect. 12 9
605 1417.60 radiation 20 1440 < th dose dependent rect. 11 1
634 1418.89 humidity 80 1440 < th dose independent sin 3 NA
648 1419.60 radiation 1 90 < th dose dependent sin 16 NA
676 1420.45 humidity 80 720 > th dose independent rect. 24 21
697 1421.38 radiation 1 270 > th dose independent rect. 9 22
724 1422.23 radiation 1 90 > th dose independent rect. 13 17
751 1423.15 humidity 80 1440 > th dose independent sin 2 NA
754 1423.15 humidity 90 720 < th dose dependent rect. 19 22
761 1423.62 radiation 10 1440 < th dose dependent sin 19 NA
826 1425.13 radiation 20 4320 > th dose dependent rect. 16 16
863 1426.12 humidity 70 720 < th dose independent rect. 12 6
876 1426.49 humidity 80 1440 < th dose independent rect. 11 3
885 1426.79 humidity 90 720 < th dose dependent rect. 5 19
897 1427.26 humidity 80 720 > th dose independent sin 21 NA
955 1428.57 temperature 20 10 < th dose independent rect. 16 14