BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0178700 Os07g0178700|Os07g0178700
         (200 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22840.1  | chr3:8084628-8085445 REVERSE LENGTH=196            103   4e-23
AT4G14690.1  | chr4:8418373-8419129 FORWARD LENGTH=194            101   3e-22

>AT3G22840.1 | chr3:8084628-8085445 REVERSE LENGTH=196
          Length = 195

 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 90  DVLAFSGPAPERINGRLAMVGFVSALAVEASRXXXXXXXXXXXXXXXXXXXXXXXXXXXX 149
           D+LAFSGPAPERINGRLAMVGFV+ALAVE S+                            
Sbjct: 88  DLLAFSGPAPERINGRLAMVGFVAALAVELSKGENVLAQISDGGVSWFLGTTAILTLASL 147

Query: 150 XXXXXRGESAEARSGGVMSADAELWNGRFAMLGLVALAFTEFLTGSPLV 198
                +G S E++S G+M++DAELWNGRFAMLGLVALAFTEF+ G  LV
Sbjct: 148 VPLF-KGISVESKSKGIMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 195



>AT4G14690.1 | chr4:8418373-8419129 FORWARD LENGTH=194
          Length = 193

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 90  DVLAFSGPAPERINGRLAMVGFVSALAVEASRXXXXXXXXXXXXXXXXXXXXXXXXXXXX 149
           D+LAFSGPAPERINGRLAMVGFV+A+A+E S+                            
Sbjct: 86  DLLAFSGPAPERINGRLAMVGFVAAIAMELSKGENVFAQISDGGVGWFLGTTALLTLASM 145

Query: 150 XXXXXRGESAEARSGGVMSADAELWNGRFAMLGLVALAFTEFLTGSPLV 198
                +G  AEA+S G M++DAELWNGRFAMLGLVALAFTE++TG  LV
Sbjct: 146 VPLF-KGIRAEAKSKGFMTSDAELWNGRFAMLGLVALAFTEYVTGGTLV 193



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,778,316
Number of extensions: 32284
Number of successful extensions: 102
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 4
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)