BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0173400 Os07g0173400|AK107434
(502 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0173400 Conserved hypothetical protein 1031 0.0
Os03g0747600 Zinc finger, FYVE/PHD-type domain containing p... 132 7e-31
Os04g0691700 Similar to Autoimmune regulator (Autoimmune po... 112 5e-25
Os01g0965700 95 1e-19
Os07g0693650 82 6e-16
>Os07g0173400 Conserved hypothetical protein
Length = 502
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/502 (100%), Positives = 502/502 (100%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF
Sbjct: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
Query: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRLLATGTINQENTTVNDMMDAQTHVEATGSR 120
GFKPVEPSKRQKIKSLNILIIHGTGLLEKRLLATGTINQENTTVNDMMDAQTHVEATGSR
Sbjct: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRLLATGTINQENTTVNDMMDAQTHVEATGSR 120
Query: 121 TPVHFSCELPVGGDPDIKHHDDSHPLVGNSKGLTLNLPCVPEEKTAELTSPVLDVVQCMP 180
TPVHFSCELPVGGDPDIKHHDDSHPLVGNSKGLTLNLPCVPEEKTAELTSPVLDVVQCMP
Sbjct: 121 TPVHFSCELPVGGDPDIKHHDDSHPLVGNSKGLTLNLPCVPEEKTAELTSPVLDVVQCMP 180
Query: 181 ESENTQEMKNGETDATLTSEDIIAEQKYEDKSNSSLTDSSAIPMTVDPGSCSSNETVKGE 240
ESENTQEMKNGETDATLTSEDIIAEQKYEDKSNSSLTDSSAIPMTVDPGSCSSNETVKGE
Sbjct: 181 ESENTQEMKNGETDATLTSEDIIAEQKYEDKSNSSLTDSSAIPMTVDPGSCSSNETVKGE 240
Query: 241 HHTSSEPSVEAILVRDKPEPSISCNVTNQEDKNSSMVPVDTTVHLATIVGNHDIQNSVEV 300
HHTSSEPSVEAILVRDKPEPSISCNVTNQEDKNSSMVPVDTTVHLATIVGNHDIQNSVEV
Sbjct: 241 HHTSSEPSVEAILVRDKPEPSISCNVTNQEDKNSSMVPVDTTVHLATIVGNHDIQNSVEV 300
Query: 301 KGMEHNTAKDQTFVSAVANNVATTEDPSDSVADCEVPIVRSIQQKDEVIADKNACATIDQ 360
KGMEHNTAKDQTFVSAVANNVATTEDPSDSVADCEVPIVRSIQQKDEVIADKNACATIDQ
Sbjct: 301 KGMEHNTAKDQTFVSAVANNVATTEDPSDSVADCEVPIVRSIQQKDEVIADKNACATIDQ 360
Query: 361 TAVDDVANNFVATTENDTDSTAELGVSMERCIQQKVEVIKDKSDSPLRTSISKVMLEKSD 420
TAVDDVANNFVATTENDTDSTAELGVSMERCIQQKVEVIKDKSDSPLRTSISKVMLEKSD
Sbjct: 361 TAVDDVANNFVATTENDTDSTAELGVSMERCIQQKVEVIKDKSDSPLRTSISKVMLEKSD 420
Query: 421 QMKSTESDSVKMKDMAIEVKVTVENFSEAGKPASALVMSNDINGEVMAKPNLTCGDDQLH 480
QMKSTESDSVKMKDMAIEVKVTVENFSEAGKPASALVMSNDINGEVMAKPNLTCGDDQLH
Sbjct: 421 QMKSTESDSVKMKDMAIEVKVTVENFSEAGKPASALVMSNDINGEVMAKPNLTCGDDQLH 480
Query: 481 GGDGTYKNSMEDDLASREPVNA 502
GGDGTYKNSMEDDLASREPVNA
Sbjct: 481 GGDGTYKNSMEDDLASREPVNA 502
>Os03g0747600 Zinc finger, FYVE/PHD-type domain containing protein
Length = 640
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 75/92 (81%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
RIHGT LAEMPFIGTR +YRRQGMC RLL+ IE LSSLNV +L+IPAI EL +TWT+ F
Sbjct: 487 RIHGTKLAEMPFIGTRNMYRRQGMCRRLLDGIEMILSSLNVEKLIIPAIAELVDTWTSKF 546
Query: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRLL 92
GF ++ S++Q++KS ++L+ GTGLL+K LL
Sbjct: 547 GFSSLDVSEKQEVKSTSMLVFPGTGLLQKPLL 578
>Os04g0691700 Similar to Autoimmune regulator (Autoimmune polyendocrinopathy
candidiasis ectodermal dystrophy protein) (APECED
protein)
Length = 385
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 68/91 (74%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
R+HGT AE+PFI T YRRQGMC RL++ IE L S +V LV+ AIPEL NTW + F
Sbjct: 215 RVHGTKAAELPFIATSVDYRRQGMCRRLMDTIEMMLRSFHVETLVLSAIPELVNTWVSGF 274
Query: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRL 91
GFKP+E +++++++++N+++ GT LL KRL
Sbjct: 275 GFKPIEDNEKKQLRNVNLMLFPGTSLLTKRL 305
>Os01g0965700
Length = 896
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 60/93 (64%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
R HG LAEMPF GT Y++QGM RL+ A+E L+SL V LVIPA+ +L TW F
Sbjct: 724 RFHGRKLAEMPFAGTLPAYQKQGMMRRLVKAVEKVLASLQVENLVIPAVADLVETWKRSF 783
Query: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRLLA 93
F+P++ R + K L+++ I GT LL+K + A
Sbjct: 784 SFRPMQAEVRDEAKKLSLVAITGTTLLQKPISA 816
>Os07g0693650
Length = 744
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTT-V 59
R++G ++AE+P +GTR RRQGMC L++ I+ L + V RLV+PA+PE+ TWT
Sbjct: 626 RVYGEEVAEVPLVGTRFARRRQGMCRLLMDEIQKLLGEMGVERLVLPAVPEMVATWTGPS 685
Query: 60 FGFKPVEPSKRQKIKSLNILIIHGTGLLEK 89
FGF+ + + RQ + IL GT + K
Sbjct: 686 FGFREMGQADRQDVAHHAILRFQGTIMCHK 715
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.126 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,359,948
Number of extensions: 685790
Number of successful extensions: 1623
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1620
Number of HSP's successfully gapped: 5
Length of query: 502
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 397
Effective length of database: 11,553,331
Effective search space: 4586672407
Effective search space used: 4586672407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)