FiT-DB / Search/ Help/ Sample detail

Os07g0173400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0128) R2 : 0.0327
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.105 (0.0269) R2dN8 : 0.0422 R2N8 : 0.0327
σ : 0.24
deviance : 26.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.69 0.174 10.9 0.529 0.0939 -0.526 -0.357 -1.25 0.101 11.6 26.41 10 -- --
15.71 0.186 10.9 0.319 0.117 -0.439 0.0838 -- 0.0601 12.6 26.41 10 -- --
14.11 0.176 10.9 0.473 0.0992 -0.5 -- -0.955 0.0918 12 26.5 7 -- --
15.58 0.184 10.9 0.323 0.0975 -0.454 -- -- 0.0604 11.6 27.8 10 -- --
14.56 0.179 10.9 0.453 -- -0.566 -- -0.945 0.0774 -- 27.51 9 -- --
18.6 0.202 10.9 0.42 0.23 -- 0.12 -- 0.156 13.2 -- -- -- --
18.66 0.202 10.9 0.424 0.229 -- -- -- 0.156 13.1 -- -- -- --
16.05 0.187 10.9 0.294 -- -0.54 -- -- 0.0398 -- 27.8 10 -- --
17.88 0.197 10.9 -- 0.0723 -0.582 -- -- -0.0064 10.4 27.85 12 -- --
21.93 0.219 10.9 0.415 -- -- -- -- 0.152 -- -- -- -- --
23.4 0.226 10.9 -- 0.222 -- -- -- 0.109 13 -- -- -- --
18.13 0.198 10.9 -- -- -0.624 -- -- -0.00932 -- 27.9 11 -- --
26.48 0.24 10.9 -- -- -- -- -- 0.105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.99 temperature 30 90 < th dose dependent rect. 17 12
2 13.05 temperature 30 10 < th dose dependent rect. 17 13
15 13.42 temperature 30 10 < th dose dependent rect. 14 16
22 13.52 temperature 30 10 < th dose dependent rect. 12 18
23 13.54 temperature 30 10 < th dose dependent sin 13 NA
32 13.63 temperature 10 10 > th dose dependent sin 13 NA
45 13.68 temperature 25 10 < th dose dependent rect. 10 20
70 13.73 temperature 25 10 < th dose dependent rect. 8 22
161 13.93 temperature 10 720 > th dose dependent rect. 12 12
165 13.93 temperature 25 10 < th dose dependent rect. 1 23
189 13.99 temperature 25 10 < th dose dependent no NA NA
192 13.99 temperature 25 10 < th dose dependent rect. 15 23
193 13.99 temperature 25 10 < th dose dependent rect. 17 23
200 14.00 temperature 25 10 < th dose dependent rect. 13 23
208 14.01 temperature 25 10 < th dose dependent rect. 19 23
216 14.02 temperature 25 10 < th dose dependent rect. 23 23
218 14.03 temperature 25 720 < th dose dependent rect. 17 3
247 14.06 temperature 25 10 < th dose dependent rect. 3 23
250 14.06 temperature 25 30 < th dose dependent rect. 21 23
260 14.08 temperature 25 720 < th dose dependent rect. 19 1
309 14.14 temperature 25 30 < th dose dependent rect. 5 23
477 14.33 temperature 25 720 < th dose dependent sin 19 NA
532 14.38 temperature 25 720 < th dose dependent rect. 9 13
648 14.50 temperature 15 90 > th dose dependent rect. 11 23
692 14.54 temperature 20 10 > th dose dependent rect. 14 12
723 14.58 temperature 25 1440 < th dose dependent rect. 21 1
729 14.58 temperature 10 720 > th dose dependent rect. 12 20
786 14.64 temperature 20 90 > th dose dependent rect. 15 18
809 14.66 temperature 25 1440 < th dose dependent rect. 20 5
881 14.70 temperature 20 10 > th dose dependent rect. 14 19
955 14.75 temperature 10 720 > th dose dependent rect. 5 19
1000 14.78 temperature 20 10 > th dose dependent rect. 12 21