BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0173400 Os07g0173400|AK107434
(502 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G36740.1 | chr5:14460790-14465727 FORWARD LENGTH=1180 129 3e-30
AT1G05380.1 | chr1:1577231-1582190 FORWARD LENGTH=1139 125 4e-29
AT4G14920.1 | chr4:8531157-8535842 REVERSE LENGTH=1139 111 8e-25
AT3G14980.1 | chr3:5039931-5044811 REVERSE LENGTH=1190 102 6e-22
AT5G36670.1 | chr5:14401491-14406427 FORWARD LENGTH=1194 89 5e-18
AT5G58610.1 | chr5:23686771-23691053 REVERSE LENGTH=1066 88 1e-17
AT2G37520.1 | chr2:15745033-15749615 REVERSE LENGTH=830 72 7e-13
AT2G27980.1 | chr2:11913950-11919741 REVERSE LENGTH=1073 69 4e-12
AT5G63900.1 | chr5:25568698-25570371 FORWARD LENGTH=558 69 7e-12
AT3G53680.1 | chr3:19892863-19897412 REVERSE LENGTH=842 69 7e-12
AT2G36720.1 | chr2:15393447-15399189 FORWARD LENGTH=1008 65 7e-11
>AT5G36740.1 | chr5:14460790-14465727 FORWARD LENGTH=1180
Length = 1179
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 72/92 (78%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
RIHG LAEMPFIGTR +YRRQGMC RL++ IESAL SL V +LVIPA+PEL +TWT+ F
Sbjct: 869 RIHGNQLAEMPFIGTRYMYRRQGMCRRLMDGIESALGSLKVDKLVIPAVPELIDTWTSGF 928
Query: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRLL 92
GF PV S+++ IK+LN+L+ G +L K L+
Sbjct: 929 GFAPVNDSEKKTIKNLNLLVFPGVDMLGKSLV 960
>AT1G05380.1 | chr1:1577231-1582190 FORWARD LENGTH=1139
Length = 1138
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 69/92 (75%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
R HG LAEMPFIGTR IYRRQGMC RL +AIESA+ SL V +LVIPAIP+ + WT F
Sbjct: 835 RFHGMQLAEMPFIGTRHIYRRQGMCRRLFDAIESAMRSLKVEKLVIPAIPDFLHAWTGNF 894
Query: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRLL 92
GF P++ S R++++SLN L+ G +L+K LL
Sbjct: 895 GFTPLDDSVRKEMRSLNTLVFPGIDMLQKPLL 926
>AT4G14920.1 | chr4:8531157-8535842 REVERSE LENGTH=1139
Length = 1138
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 65/93 (69%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
R HG LAEMPFIGTR +YR QGMC RL + +ESAL L V+ L+IPA + + W + F
Sbjct: 893 RFHGNRLAEMPFIGTRHVYRHQGMCRRLFSVVESALQHLKVKLLIIPATADFSHVWISKF 952
Query: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRLLA 93
GF+ VE S +++++S+N+L G +L+K LLA
Sbjct: 953 GFRQVEDSLKKEMRSMNLLTFPGIDVLQKELLA 985
>AT3G14980.1 | chr3:5039931-5044811 REVERSE LENGTH=1190
Length = 1189
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 61/92 (66%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
R+HG +AEMP + T YRRQGMC L+ AIE L SL V +LV+ A+P L TWT F
Sbjct: 933 RVHGVTIAEMPLVATCSKYRRQGMCRILVAAIEEMLMSLKVEKLVVAALPSLVETWTEGF 992
Query: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRLL 92
GFKP++ +R +K +N+++ GT LL+K L
Sbjct: 993 GFKPMDDEERDALKRINLMVFPGTTLLKKTLY 1024
>AT5G36670.1 | chr5:14401491-14406427 FORWARD LENGTH=1194
Length = 1193
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 18/108 (16%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTV- 59
RIHG LAEMPFIGTR +YRRQGMC RL++ IES ++ + L I + L + W
Sbjct: 869 RIHGNQLAEMPFIGTRYMYRRQGMCRRLMDGIESFVAYFSQMFLAISEV--LLDVWQFCC 926
Query: 60 ---------------FGFKPVEPSKRQKIKSLNILIIHGTGLLEKRLL 92
FGF PV S+++ IK+LN+L+ G +L K L+
Sbjct: 927 YPACFGDGPFCFFSGFGFAPVNDSEKKTIKNLNLLVFPGVDMLGKSLV 974
>AT5G58610.1 | chr5:23686771-23691053 REVERSE LENGTH=1066
Length = 1065
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
RI G +AEMPFIGTR +R++GMC L+N +E L L V RLV+PA+P + NTW F
Sbjct: 883 RILGKKVAEMPFIGTRFQHRQRGMCRVLINELEKVLIDLGVERLVLPAVPCVLNTWINSF 942
Query: 61 GFKPVEPSKRQKIKSLNILIIHGTGLLEKRLLATG 95
GF + S+R+ +L T L EK L+ +G
Sbjct: 943 GFTKMTISERKNFLKFTLLEFGRTILCEKILIKSG 977
>AT2G37520.1 | chr2:15745033-15749615 REVERSE LENGTH=830
Length = 829
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
RI G ++AE+P + T Y+ +G L +E+ LSSLNV LV+PA E ++ WT F
Sbjct: 724 RIFGQEVAELPIVATSREYQGRGYFQGLYACVENLLSSLNVENLVLPAAEEAESIWTKKF 783
Query: 61 GFKPVEPSKRQKI-KSLNILIIHGTGLLEKRLLATGTINQENTTV 104
GF + + Q+ K + + I GT +LEK++ T E+TT+
Sbjct: 784 GFTKMSDQQLQEYQKEVQLTIFKGTSMLEKKVPKATTGLSESTTL 828
>AT2G27980.1 | chr2:11913950-11919741 REVERSE LENGTH=1073
Length = 1072
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
R+ G++LAE+P + T + QG L IE L LNV+ +V+PA E ++ WT F
Sbjct: 966 RVFGSELAELPLVATSKDCQGQGYFQCLFACIERLLGFLNVKHIVLPAADEAKSIWTDKF 1025
Query: 61 GF-KPVEPSKRQKIKSLNILIIHGTGLLEKRLLATGTINQ 99
GF K + ++ K +++I HGT +L K + A +++
Sbjct: 1026 GFTKMTDEEVKEYRKDYSVMIFHGTSMLRKSVPAPSAVSK 1065
>AT5G63900.1 | chr5:25568698-25570371 FORWARD LENGTH=558
Length = 557
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 6 DLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVFGFKPV 65
D+ E+P + T YRR GMC L++ +E +S + V RLV+PA E+ TWT FGF +
Sbjct: 455 DVVEIPLVATLSSYRRSGMCRVLMDELEKQMSQMGVCRLVLPAAKEVVTTWTERFGFSVM 514
Query: 66 EPSKRQKIKSLNILIIHGTGLLEKRL 91
S+R ++ +L GT + K L
Sbjct: 515 NSSERLELVKHGMLDFVGTIMCHKFL 540
>AT3G53680.1 | chr3:19892863-19897412 REVERSE LENGTH=842
Length = 841
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
RI G +AE+P + T Y+ +G L +E+ LSSLNV L++PA E ++ WT F
Sbjct: 740 RIFGQKVAELPIVATSREYQGRGYFQGLFACVENLLSSLNVENLLLPAAEEAESIWTNKF 799
Query: 61 GFKPVEPSKRQKI-KSLNILIIHGTGLLEKRL 91
GF + + Q+ + + + I GT +LEK++
Sbjct: 800 GFTKMTEHRLQRYQREVQLTIFKGTSMLEKKV 831
>AT2G36720.1 | chr2:15393447-15399189 FORWARD LENGTH=1008
Length = 1007
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 1 RIHGTDLAEMPFIGTRGIYRRQGMCHRLLNAIESALSSLNVRRLVIPAIPELQNTWTTVF 60
R+ G ++AE+P + TR R +G L + IE LSSLNV +V+PA E + W F
Sbjct: 881 RVFGREVAELPLVATRMCSREKGYFQLLFSCIEKLLSSLNVESIVVPAAEEAEPLWMNKF 940
Query: 61 GFKPVEP---SKRQKIKSLNILIIHGTGLLEK 89
GF+ + P SK KI ++ G +L+K
Sbjct: 941 GFRKLAPEQLSKYIKI-CYQMVRFKGASMLQK 971
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.126 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,753,882
Number of extensions: 462669
Number of successful extensions: 1310
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1309
Number of HSP's successfully gapped: 11
Length of query: 502
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 399
Effective length of database: 8,282,721
Effective search space: 3304805679
Effective search space used: 3304805679
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 114 (48.5 bits)