BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0172900 Os07g0172900|AK065471
         (150 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0172900  Similar to Integral membrane protein                162   9e-41
Os03g0795100  Conserved hypothetical protein                       75   2e-14

>Os07g0172900 Similar to Integral membrane protein
          Length = 150

 Score =  162 bits (410), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 90/150 (60%)

Query: 1   MRSSHCESYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEDKPPPLQKIE 60
           MRSSHCESY                                      FAEDKPPPLQKIE
Sbjct: 1   MRSSHCESYCAPPLCNLPCLPKSKDDSTTDDAAAASSPTPATVVAAAFAEDKPPPLQKIE 60

Query: 61  AAVTANKDHXXXXXXXXXXXSKEVVVTVVPKSSLKKTNCEDSKNVVKGNVKWMDLLGKDL 120
           AAVTANKDH           SKEVVVTVVPKSSLKKTNCEDSKNVVKGNVKWMDLLGKDL
Sbjct: 61  AAVTANKDHDDDGDGGGDEGSKEVVVTVVPKSSLKKTNCEDSKNVVKGNVKWMDLLGKDL 120

Query: 121 TQVKEFEPXXXXXXXXXXXNTCICVIQIHS 150
           TQVKEFEP           NTCICVIQIHS
Sbjct: 121 TQVKEFEPSESGDSDDEDGNTCICVIQIHS 150



>Os03g0795100 Conserved hypothetical protein
          Length = 158

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 56/111 (50%), Gaps = 14/111 (12%)

Query: 50  EDKPPPLQKIEAAVTANKDHXXXXXXX------------XXXXSKEVVVTVVPKSSLKKT 97
           EDKPPP+QKIEAAV A KD                        +         KS+LKK 
Sbjct: 49  EDKPPPVQKIEAAV-AEKDGDDSKEVDGDEEEEEDDDDVKTAVAVAAPPPAPLKSNLKKA 107

Query: 98  NCEDSKNVVKGNVKWMDLLGKDLTQVKEFEPXXXXXXXXXXX-NTCICVIQ 147
           +C DSK   KGNVKW+DLLGKDLT+VKEFEP              C+C IQ
Sbjct: 108 DCADSKCAEKGNVKWLDLLGKDLTEVKEFEPSESGDSMDEDDIAECVCAIQ 158



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.128    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,914,947
Number of extensions: 62910
Number of successful extensions: 80
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)