Os07g0172900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Integral membrane protein.
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Os07g0172900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Integral membrane protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.18 | 0.249 | 10.1 | -0.982 | 0.522 | -1.57 | -0.523 | -1.34 | -0.403 | 13.9 | 25.7 | 99 | -- | -- |
| 30.88 | 0.259 | 10.1 | -1.14 | 0.601 | -1.42 | -0.351 | -- | -0.394 | 13.8 | 25.71 | 151 | -- | -- |
| 28.71 | 0.25 | 10.1 | -1.03 | 0.536 | -1.55 | -- | -1.06 | -0.421 | 13.7 | 25.68 | 138 | -- | -- |
| 30.39 | 0.257 | 10.1 | -1.19 | 0.584 | -1.43 | -- | -- | -0.435 | 13.7 | 25.7 | 143 | -- | -- |
| 39.23 | 0.293 | 10.1 | -1.16 | -- | -1.81 | -- | -0.74 | -0.502 | -- | 27.68 | 105 | -- | -- |
| 60.83 | 0.366 | 10 | -0.842 | 0.855 | -- | -0.0229 | -- | -0.138 | 14.2 | -- | -- | -- | -- |
| 60.83 | 0.365 | 10 | -0.842 | 0.855 | -- | -- | -- | -0.138 | 14.2 | -- | -- | -- | -- |
| 40.01 | 0.296 | 10.1 | -1.28 | -- | -1.79 | -- | -- | -0.525 | -- | 28.05 | 112 | -- | -- |
| 63.89 | 0.374 | 10.1 | -- | 0.66 | -0.971 | -- | -- | -0.224 | 14.4 | 25.6 | 49 | -- | -- |
| 104.41 | 0.477 | 10.1 | -0.878 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 79.54 | 0.417 | 10 | -- | 0.871 | -- | -- | -- | -0.0445 | 14.2 | -- | -- | -- | -- |
| 80.71 | 0.42 | 10.1 | -- | -- | -1.43 | -- | -- | -0.318 | -- | 28.05 | 112 | -- | -- |
| 124.76 | 0.521 | 10 | -- | -- | -- | -- | -- | -0.0614 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.68 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 2 | 27.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 6 | 28.17 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 8 | 28.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 28 | 28.69 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 53 | 29.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 55 | 29.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 57 | 29.37 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 59 | 29.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 82 | 29.62 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 90 | 29.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 91 | 29.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 98 | 29.73 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 221 | 30.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 224 | 30.71 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 227 | 30.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 229 | 30.74 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 406 | 31.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 431 | 31.77 | temperature | 15 | 270 | > th | dose dependent | sin | 12 | NA |
| 439 | 31.83 | temperature | 15 | 720 | > th | dose dependent | sin | 16 | NA |
| 453 | 31.89 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 930 | 34.22 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 10 |