BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0172900 Os07g0172900|AK065471
         (150 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55475.1  | chr1:20711977-20712586 FORWARD LENGTH=121           48   2e-06

>AT1G55475.1 | chr1:20711977-20712586 FORWARD LENGTH=121
          Length = 120

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 87  TVVPKSSLKK--TNCEDSKNVVKGNVKWMDLLGKDLTQVKEFEPXXXXXXXXXXXNTCIC 144
           T+  KSSL+K  +N  +++   K  V+W+D++GK+L +++EFEP            TC+C
Sbjct: 58  TLTLKSSLRKVDSNSTEAEKREKKKVQWVDVIGKELAEIREFEPSDEDDIDSDRGKTCVC 117

Query: 145 VI 146
           +I
Sbjct: 118 II 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.128    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,958,105
Number of extensions: 48323
Number of successful extensions: 84
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)