Os03g0795100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0795100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.54 | 0.353 | 11.3 | -0.22 | 1.88 | 0.831 | 0.641 | -1.75 | -0.273 | 5.91 | 24.2 | 12 | -- | -- |
| 58.03 | 0.358 | 11.3 | 0.00998 | 1.86 | 0.702 | 0.823 | -- | -0.2 | 5.93 | 24.25 | 4 | -- | -- |
| 57.5 | 0.353 | 11.3 | -0.22 | 1.87 | 0.805 | -- | -1.91 | -0.275 | 5.91 | 24.2 | 12 | -- | -- |
| 59.66 | 0.362 | 11.3 | 0.0246 | 1.85 | 0.659 | -- | -- | -0.196 | 5.96 | 24.36 | 4 | -- | -- |
| 169.83 | 0.607 | 11.3 | 0.537 | -- | -1.3 | -- | 0.999 | 0.0151 | -- | 24.8 | 499 | -- | -- |
| 65.29 | 0.379 | 11.3 | 0.118 | 1.68 | -- | 0.598 | -- | -0.124 | 6.39 | -- | -- | -- | -- |
| 66.18 | 0.381 | 11.3 | 0.126 | 1.69 | -- | -- | -- | -0.126 | 6.39 | -- | -- | -- | -- |
| 171.44 | 0.61 | 11.3 | 0.38 | -- | -1.21 | -- | -- | 0.0142 | -- | 24.6 | 483 | -- | -- |
| 59.67 | 0.362 | 11.3 | -- | 1.85 | 0.665 | -- | -- | -0.199 | 5.95 | 24.36 | 4 | -- | -- |
| 213.82 | 0.683 | 11.3 | 0.17 | -- | -- | -- | -- | -0.0898 | -- | -- | -- | -- | -- |
| 66.6 | 0.382 | 11.3 | -- | 1.69 | -- | -- | -- | -0.14 | 6.39 | -- | -- | -- | -- |
| 175.16 | 0.616 | 11.3 | -- | -- | -1.15 | -- | -- | -0.0341 | -- | 24.65 | 480 | -- | -- |
| 214.58 | 0.684 | 11.3 | -- | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 7 |
| 14 | 52.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 11 |
| 17 | 53.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 23 | 53.17 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 11 |
| 59 | 53.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 79 | 54.27 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 80 | 54.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 84 | 54.30 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 15 |
| 85 | 54.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 95 | 54.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 102 | 54.49 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 5 |
| 112 | 54.55 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 119 | 54.62 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 131 | 54.69 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 149 | 54.77 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 197 | 55.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 200 | 55.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 9 |
| 201 | 55.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 11 |
| 306 | 55.50 | temperature | 25 | 90 | < th | dose independent | sin | 5 | NA |
| 341 | 55.64 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 421 | 55.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 471 | 56.01 | temperature | 10 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 492 | 56.07 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 502 | 56.09 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 506 | 56.10 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 12 |
| 510 | 56.11 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 518 | 56.13 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 567 | 56.26 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 17 |
| 609 | 56.36 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 14 |
| 622 | 56.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 636 | 56.42 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 679 | 56.50 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 7 |
| 711 | 56.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 829 | 56.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 12 |
| 878 | 56.87 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 13 | 6 |
| 895 | 56.89 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 933 | 56.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 940 | 56.95 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 946 | 56.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 962 | 56.97 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 12 |
| 966 | 56.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |