BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0795100 Os03g0795100|AK068731
         (158 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0795100  Conserved hypothetical protein                      160   4e-40
Os07g0172900  Similar to Integral membrane protein                100   3e-22

>Os03g0795100 Conserved hypothetical protein
          Length = 158

 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 91/158 (57%)

Query: 1   MRLSHCESYCGPPLCYIPCLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQKIEA 60
           MRLSHCESYCGPPLCYIPCLP                                 VQKIEA
Sbjct: 1   MRLSHCESYCGPPLCYIPCLPKSKDAAGDAAHKSKDAAAADAVPVAAAEDKPPPVQKIEA 60

Query: 61  AVAXXXXXXXXXXXXXXXXXXXXXXXKTXXXXXXXXXXXLKSNLKKADCADSKCAEKGNV 120
           AVA                       KT           LKSNLKKADCADSKCAEKGNV
Sbjct: 61  AVAEKDGDDSKEVDGDEEEEEDDDDVKTAVAVAAPPPAPLKSNLKKADCADSKCAEKGNV 120

Query: 121 KWLDLLGKDLTEVKEFEPSESGDSMDEDDIAECVCAIQ 158
           KWLDLLGKDLTEVKEFEPSESGDSMDEDDIAECVCAIQ
Sbjct: 121 KWLDLLGKDLTEVKEFEPSESGDSMDEDDIAECVCAIQ 158



>Os07g0172900 Similar to Integral membrane protein
          Length = 150

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 1   MRLSHCESYCGPPLCYIPCLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VQKIE 59
           MR SHCESYC PPLC +PCLP                                  +QKIE
Sbjct: 1   MRSSHCESYCAPPLCNLPCLPKSKDDSTTDDAAAASSPTPATVVAAAFAEDKPPPLQKIE 60

Query: 60  AAVAXXXXXXXXXXXXXXXXXXXXXXXKTXXXXXXXXXXXLKSNLKKADCADSKCAEKGN 119
           AAV                                      KS+LKK +C DSK   KGN
Sbjct: 61  AAVTANKDHDDDGDGG-----------GDEGSKEVVVTVVPKSSLKKTNCEDSKNVVKGN 109

Query: 120 VKWLDLLGKDLTEVKEFEPSESGDSMDEDDIAECVCAIQ 158
           VKW+DLLGKDLT+VKEFEPSESGDS DED    C+C IQ
Sbjct: 110 VKWMDLLGKDLTQVKEFEPSESGDSDDEDG-NTCICVIQ 147



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,260,613
Number of extensions: 79425
Number of successful extensions: 230
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 65
Effective length of database: 12,179,899
Effective search space: 791693435
Effective search space used: 791693435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)