BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0795100 Os03g0795100|AK068731
         (158 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55475.1  | chr1:20711977-20712586 FORWARD LENGTH=121           52   2e-07
AT3G13480.1  | chr3:4393184-4393848 REVERSE LENGTH=173             51   3e-07

>AT1G55475.1 | chr1:20711977-20712586 FORWARD LENGTH=121
          Length = 120

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 3/60 (5%)

Query: 100 LKSNLKKADCADSKC--AEKGNVKWLDLLGKDLTEVKEFEPSESGDSMDEDDIAECVCAI 157
           LKS+L+K D   ++    EK  V+W+D++GK+L E++EFEPS+  D +D D    CVC I
Sbjct: 61  LKSSLRKVDSNSTEAEKREKKKVQWVDVIGKELAEIREFEPSDE-DDIDSDRGKTCVCII 119



>AT3G13480.1 | chr3:4393184-4393848 REVERSE LENGTH=173
          Length = 172

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 100 LKSNLKKA--DCADSKCAEKGNVKWLDLLGKDLTEVKEFEPSESGDSMDEDDIAECVCAI 157
           LKS+LKK   D AD    EK  V+W+DL+GK+L E++EFE SE  D   + D   CVC I
Sbjct: 113 LKSSLKKEVLDSADGGRKEKKKVQWVDLMGKELAEIREFESSEEEDVRYDGD-QSCVCVI 171



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,100,189
Number of extensions: 54804
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)