BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0172200 Os07g0172200|AK103352
         (367 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0172200  Conserved hypothetical protein                      593   e-170
Os06g0730200  Conserved hypothetical protein                      209   2e-54

>Os07g0172200 Conserved hypothetical protein
          Length = 367

 Score =  593 bits (1530), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 304/367 (82%), Positives = 304/367 (82%)

Query: 1   MVKKKEAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQ 60
           MVKKKEAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQ
Sbjct: 1   MVKKKEAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQ 60

Query: 61  RKSRXXXXXXXXXXXXXXXXXXRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYL 120
           RKSR                  RVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYL
Sbjct: 61  RKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYL 120

Query: 121 TLQMSRSTKGVVCEDVFESLIVFSEAWWIGTKEENPQELKLDFPKEFQNDGAVADSDFKG 180
           TLQMSRSTKGVVCEDVFESLIVFSEAWWIGTKEENPQELKLDFPKEFQNDGAVADSDFKG
Sbjct: 121 TLQMSRSTKGVVCEDVFESLIVFSEAWWIGTKEENPQELKLDFPKEFQNDGAVADSDFKG 180

Query: 181 GAGASCDEAVTINKPPKETTTGSLSPXXXXXXXXXXXXXXXXXXNTQSTSQAPSVRQSAR 240
           GAGASCDEAVTINKPPKETTTGSLSP                  NTQSTSQAPSVRQSAR
Sbjct: 181 GAGASCDEAVTINKPPKETTTGSLSPKIESDIDSSEDSDLKDEDNTQSTSQAPSVRQSAR 240

Query: 241 TAGKALKYTXXXXXXXXXXXXXXXXVPEDMDEKVKSPAVKNESQSEDIKPADSSAQPISA 300
           TAGKALKYT                VPEDMDEKVKSPAVKNESQSEDIKPADSSAQPISA
Sbjct: 241 TAGKALKYTEISSGDDSSDNDDEIDVPEDMDEKVKSPAVKNESQSEDIKPADSSAQPISA 300

Query: 301 KKEPLVQATLSSMFKKAEEKKRCTRSPKGSPATKGPAAKKQRASPEEKHPTXXXXXXXXX 360
           KKEPLVQATLSSMFKKAEEKKRCTRSPKGSPATKGPAAKKQRASPEEKHPT         
Sbjct: 301 KKEPLVQATLSSMFKKAEEKKRCTRSPKGSPATKGPAAKKQRASPEEKHPTGKKSGKCSS 360

Query: 361 XXVVRSI 367
             VVRSI
Sbjct: 361 KSVVRSI 367



>Os06g0730200 Conserved hypothetical protein
          Length = 144

 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/127 (83%), Positives = 107/127 (84%)

Query: 1   MVKKKEAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQ 60
           MVKKK AGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQ
Sbjct: 16  MVKKKPAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQ 75

Query: 61  RKSRXXXXXXXXXXXXXXXXXXRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYL 120
           RKSR                  RVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYL
Sbjct: 76  RKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYL 135

Query: 121 TLQMSRS 127
           TLQM+ S
Sbjct: 136 TLQMTSS 142



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.126    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,443,474
Number of extensions: 393768
Number of successful extensions: 1296
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 2
Length of query: 367
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 265
Effective length of database: 11,709,973
Effective search space: 3103142845
Effective search space used: 3103142845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 157 (65.1 bits)