Os07g0172200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0172200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.34 | 0.212 | 11.8 | -0.925 | 0.333 | -0.819 | 0.138 | 0.575 | -0.107 | 3.61 | 28.6 | 238 | -- | -- |
| 20.6 | 0.211 | 11.8 | -0.828 | 0.329 | -0.835 | 0.309 | -- | -0.0853 | 3.62 | 27.98 | 232 | -- | -- |
| 20.38 | 0.21 | 11.8 | -0.939 | 0.329 | -0.811 | -- | 0.643 | -0.111 | 3.53 | 28.4 | 236 | -- | -- |
| 20.87 | 0.213 | 11.8 | -0.827 | 0.321 | -0.819 | -- | -- | -0.0844 | 3.45 | 27.79 | 232 | -- | -- |
| 21.66 | 0.217 | 11.8 | -0.937 | -- | -0.725 | -- | 0.567 | -0.103 | -- | 28.7 | 1237 | -- | -- |
| 30.36 | 0.258 | 11.8 | -0.606 | 0.103 | -- | 0.197 | -- | 0.096 | 2.98 | -- | -- | -- | -- |
| 30.46 | 0.258 | 11.8 | -0.611 | 0.104 | -- | -- | -- | 0.0951 | 2.14 | -- | -- | -- | -- |
| 21.86 | 0.218 | 11.8 | -0.826 | -- | -0.807 | -- | -- | -0.0886 | -- | 27.1 | 1247 | -- | -- |
| 36.82 | 0.283 | 11.8 | -- | 0.215 | -0.477 | -- | -- | 0.0759 | 3.2 | 27.51 | 189 | -- | -- |
| 31.1 | 0.261 | 11.8 | -0.606 | -- | -- | -- | -- | 0.0975 | -- | -- | -- | -- | -- |
| 40.29 | 0.297 | 11.7 | -- | 0.0921 | -- | -- | -- | 0.163 | 1.99 | -- | -- | -- | -- |
| 37.99 | 0.287 | 11.8 | -- | -- | -0.398 | -- | -- | 0.0886 | -- | 27.41 | 1093 | -- | -- |
| 40.8 | 0.298 | 11.7 | -- | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.03 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 6 | 20.09 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 8 | 20.10 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 24 | 20.18 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 33 | 20.22 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 45 | 20.29 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 53 | 20.34 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 57 | 20.35 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 69 | 20.42 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 11 | 11 |
| 72 | 20.43 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 77 | 20.45 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 15 | 5 |
| 78 | 20.45 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 80 | 20.45 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 85 | 20.46 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 86 | 20.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 94 | 20.48 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 16 |
| 98 | 20.48 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 100 | 20.49 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 11 | 11 |
| 101 | 20.49 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 11 | 14 |
| 104 | 20.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 110 | 20.50 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 117 | 20.51 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 129 | 20.52 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 132 | 20.53 | temperature | 25.0 | 4320 | < th | dose independent | sin | 18 | NA |
| 133 | 20.53 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 139 | 20.54 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 10 | 15 |
| 165 | 20.56 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 214 | 20.59 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 217 | 20.60 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 223 | 20.60 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 229 | 20.61 | temperature | 25.0 | 4320 | > th | dose independent | sin | 18 | NA |
| 256 | 20.63 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 271 | 20.64 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 277 | 20.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 380 | 20.70 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 400 | 20.71 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 534 | 20.77 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 553 | 20.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 594 | 20.80 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 595 | 20.80 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 601 | 20.80 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 606 | 20.80 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 635 | 20.81 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 779 | 20.86 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 780 | 20.87 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 893 | 20.91 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 926 | 20.92 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 927 | 20.92 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 951 | 20.93 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 955 | 20.93 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 14 |