Os06g0730200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0730200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.24 | 0.226 | 11.9 | -0.66 | 0.191 | 0.238 | -0.0312 | -4.93 | -0.12 | 0.824 | 27.81 | 3517 | -- | -- |
| 25.77 | 0.236 | 11.7 | 0.333 | 0.197 | -0.261 | 0.0704 | -- | 0.133 | 1.68 | 30.86 | 19468 | -- | -- |
| 23.22 | 0.224 | 11.9 | -0.649 | 0.19 | 0.239 | -- | -4.91 | -0.12 | 0.888 | 27.94 | 3370 | -- | -- |
| 25.16 | 0.234 | 11.7 | 0.345 | 0.197 | -0.383 | -- | -- | 0.176 | 0.589 | 30.53 | 19481 | -- | -- |
| 25.42 | 0.235 | 11.9 | -0.758 | -- | 0.336 | -- | -5.45 | -0.124 | -- | 28 | 3319 | -- | -- |
| 28.65 | 0.251 | 11.7 | 0.174 | 0.169 | -- | -0.168 | -- | 0.02 | 0.0814 | -- | -- | -- | -- |
| 28.74 | 0.251 | 11.7 | 0.18 | 0.171 | -- | -- | -- | 0.0202 | 0.589 | -- | -- | -- | -- |
| 27.17 | 0.243 | 11.7 | 0.269 | -- | -0.278 | -- | -- | -0.0014 | -- | 29.7 | 5928 | -- | -- |
| 27.62 | 0.245 | 11.7 | -- | 0.185 | -0.256 | -- | -- | 0.123 | 0.773 | 30.1 | 18463 | -- | -- |
| 30.59 | 0.258 | 11.7 | 0.186 | -- | -- | -- | -- | 0.0232 | -- | -- | -- | -- | -- |
| 29.6 | 0.254 | 11.8 | -- | 0.174 | -- | -- | -- | 0.00016 | 0.639 | -- | -- | -- | -- |
| 28.8 | 0.25 | 11.8 | -- | -- | -0.27 | -- | -- | -0.0519 | -- | 29.9 | 4356 | -- | -- |
| 31.5 | 0.262 | 11.7 | -- | -- | -- | -- | -- | 0.00252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.28 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 2 | 22.30 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 21 | 22.59 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 28 | 22.65 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 42 | 22.70 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 67 | 22.73 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 75 | 22.76 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 92 | 22.88 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 106 | 22.94 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 130 | 22.99 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 133 | 23.00 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 140 | 23.02 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 143 | 23.03 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 145 | 23.03 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 167 | 23.06 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 169 | 23.06 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 176 | 23.07 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 179 | 23.07 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 188 | 23.08 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 206 | 23.09 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 209 | 23.09 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 250 | 23.13 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 255 | 23.13 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 272 | 23.13 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 281 | 23.14 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 288 | 23.14 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 289 | 23.14 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 297 | 23.15 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 450 | 23.22 | atmosphere | 1005.0 | 43200 | < th | dose dependent | no | NA | NA |
| 468 | 23.22 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 497 | 23.23 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 505 | 23.24 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 508 | 23.24 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 543 | 23.26 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 556 | 23.27 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 611 | 23.29 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 613 | 23.29 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 620 | 23.30 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 623 | 23.30 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 655 | 23.32 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 684 | 23.34 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 724 | 23.36 | temperature | 30.0 | 4320 | < th | dose independent | sin | 8 | NA |
| 746 | 23.37 | temperature | 30.0 | 4320 | > th | dose independent | sin | 8 | NA |
| 748 | 23.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 834 | 23.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 872 | 23.43 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 904 | 23.45 | temperature | 25.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 982 | 23.51 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 12 | 3 |