BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0164600 Os07g0164600|AK107727
         (202 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0164600  SOH1 family protein                                 261   3e-70
Os10g0564100  SOH1 family protein                                 253   7e-68

>Os07g0164600 SOH1 family protein
          Length = 202

 Score =  261 bits (666), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/185 (70%), Positives = 131/185 (70%)

Query: 18  QRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQRPEYIKYIMYPHCLFF 77
           QRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQRPEYIKYIMYPHCLFF
Sbjct: 18  QRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQRPEYIKYIMYPHCLFF 77

Query: 78  LELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHIXXXXXXXXXXXXXXXXXXX 137
           LELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHI                   
Sbjct: 78  LELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHILPRPPPEPTPTPAPAPAAV 137

Query: 138 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFAGTPGTNIPKNDMRNVMGGQGGR 197
                                              QFAGTPGTNIPKNDMRNVMGGQGGR
Sbjct: 138 PPSASVPSTVVPPVAAPPSALLPMSAAGASAMSPMQFAGTPGTNIPKNDMRNVMGGQGGR 197

Query: 198 KRKIG 202
           KRKIG
Sbjct: 198 KRKIG 202



>Os10g0564100 SOH1 family protein
          Length = 202

 Score =  253 bits (646), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 130/187 (69%), Positives = 131/187 (70%), Gaps = 2/187 (1%)

Query: 18  QRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQRPEYIKYIMYPHCLFF 77
           QRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQRPEYIKYIMYPHCLFF
Sbjct: 16  QRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQRPEYIKYIMYPHCLFF 75

Query: 78  LELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHIXXXXXXXXXXXXXXXXXXX 137
           LELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHI                   
Sbjct: 76  LELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHILPRPPPEPTPAPAPAPAPA 135

Query: 138 XXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXQFAGTPGTNIPKNDMRNVMGGQG 195
                                                QFAGTPGTNIPKNDMRNVMGGQG
Sbjct: 136 TVPPAAPVPSTVVPPVAAPSSSLPPMSAAGASAMSPMQFAGTPGTNIPKNDMRNVMGGQG 195

Query: 196 GRKRKIG 202
           GRKRK+G
Sbjct: 196 GRKRKMG 202



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.142    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,800,901
Number of extensions: 146326
Number of successful extensions: 337
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 4
Length of query: 202
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,023,257
Effective search space: 1274465242
Effective search space used: 1274465242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)