Os10g0564100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SOH1 family protein.
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Os10g0564100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SOH1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.9 | 0.181 | 9.99 | 0.451 | 0.116 | -0.366 | -0.303 | 0.149 | -0.0475 | 4.52 | 3.46 | 28 | -- | -- |
| 14.94 | 0.18 | 9.99 | 0.453 | 0.122 | -0.357 | -0.327 | -- | -0.049 | 4.12 | 4.295 | 27 | -- | -- |
| 15.11 | 0.181 | 9.99 | 0.449 | 0.117 | -0.356 | -- | 0.256 | -0.0468 | 4.21 | 3.865 | 27 | -- | -- |
| 15.27 | 0.182 | 9.99 | 0.458 | 0.115 | -0.362 | -- | -- | -0.0458 | 4.29 | 3.986 | 27 | -- | -- |
| 15.51 | 0.183 | 9.99 | 0.467 | -- | -0.416 | -- | 0.27 | -0.0406 | -- | -0.005366 | 59 | -- | -- |
| 16.86 | 0.192 | 9.99 | 0.448 | 0.267 | -- | -0.261 | -- | -0.0577 | 1.95 | -- | -- | -- | -- |
| 17.11 | 0.194 | 9.99 | 0.456 | 0.266 | -- | -- | -- | -0.0561 | 1.8 | -- | -- | -- | -- |
| 15.61 | 0.184 | 9.99 | 0.458 | -- | -0.431 | -- | -- | -0.0407 | -- | 1.984 | 61 | -- | -- |
| 20.63 | 0.212 | 10 | -- | 0.112 | -0.389 | -- | -- | -0.0979 | 4.67 | 2.819 | 49 | -- | -- |
| 21.41 | 0.216 | 9.99 | 0.467 | -- | -- | -- | -- | -0.05 | -- | -- | -- | -- | -- |
| 22.58 | 0.222 | 10 | -- | 0.275 | -- | -- | -- | -0.107 | 1.85 | -- | -- | -- | -- |
| 21.13 | 0.214 | 10 | -- | -- | -0.444 | -- | -- | -0.0903 | -- | 2.024 | 61 | -- | -- |
| 27.15 | 0.243 | 10 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.61 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 2 | 14.64 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 5 | 14.70 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 6 | 14.70 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 10 | 14.71 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 12 | 14.72 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 19 | 14.74 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 25 | 14.75 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 31 | 14.76 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 44 | 14.77 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 54 | 14.79 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 57 | 14.79 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 71 | 14.80 | radiation | 30.0 | 30 | < th | dose independent | rect. | 3 | 11 |
| 85 | 14.82 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 109 | 14.84 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 110 | 14.84 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 112 | 14.84 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 16 |
| 124 | 14.85 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 137 | 14.85 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 145 | 14.85 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 157 | 14.85 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 18 |
| 166 | 14.85 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 230 | 14.87 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 232 | 14.87 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 263 | 14.88 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 267 | 14.88 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 268 | 14.88 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 271 | 14.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 323 | 14.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 324 | 14.88 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 326 | 14.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 6 |
| 327 | 14.88 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 9 | 8 |
| 328 | 14.88 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 6 | 11 |
| 332 | 14.89 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 359 | 14.89 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 393 | 14.89 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 21 | 22 |
| 411 | 14.90 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 414 | 14.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 468 | 14.90 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 20 |
| 491 | 14.90 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 517 | 14.91 | atmosphere | 1005.0 | 43200 | < th | dose independent | no | NA | NA |
| 520 | 14.91 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 527 | 14.91 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 530 | 14.91 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 598 | 14.91 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 615 | 14.91 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 657 | 14.92 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 718 | 14.92 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 721 | 14.92 | radiation | 1.0 | 30 | > th | dose dependent | sin | 0 | NA |
| 724 | 14.92 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 726 | 14.93 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 755 | 14.93 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 784 | 14.93 | radiation | 1.0 | 30 | > th | dose dependent | no | NA | NA |
| 857 | 14.94 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 896 | 14.94 | radiation | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 955 | 14.96 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 957 | 14.96 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 958 | 14.96 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 973 | 14.96 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 989 | 14.96 | radiation | 30.0 | 30 | < th | dose independent | rect. | 3 | 19 |