BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0138100 Os07g0138100|AK059496
(484 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0138100 Pleckstrin homology-type domain containing pro... 849 0.0
Os03g0666200 Pleckstrin homology-type domain containing pro... 533 e-151
Os05g0128700 92 7e-19
>Os07g0138100 Pleckstrin homology-type domain containing protein
Length = 484
Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/484 (87%), Positives = 423/484 (87%)
Query: 1 MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGK 60
MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGK
Sbjct: 1 MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGK 60
Query: 61 MEYKIRRSDAAVRGIIVFDSTSTVTLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPS 120
MEYKIRRSDAAVRGIIVFDSTSTVTLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPS
Sbjct: 61 MEYKIRRSDAAVRGIIVFDSTSTVTLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPS 120
Query: 121 AARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKXXXXXXXXXXXXIEASKEVEAAMK 180
AARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGK IEASKEVEAAMK
Sbjct: 121 AARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMK 180
Query: 181 VSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQXX 240
VSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQ
Sbjct: 181 VSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQET 240
Query: 241 XXXXXXXXXXXHSIDEQRRFLSSELERLKQDQEKQIEFXXXXXXXXXXXXXXXXXXXXHL 300
HSIDEQRRFLSSELERLKQDQEKQIEF HL
Sbjct: 241 AEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHL 300
Query: 301 LKERDSALQEAQMWRSELGKARGNAVILXXXXXXXXXXXXXXXXDADMRINDAASRLDSA 360
LKERDSALQEAQMWRSELGKARGNAVIL DADMRINDAASRLDSA
Sbjct: 301 LKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSA 360
Query: 361 TKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDP 420
TKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDP
Sbjct: 361 TKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDP 420
Query: 421 IPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSEN 480
IPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSEN
Sbjct: 421 IPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSEN 480
Query: 481 AFHG 484
AFHG
Sbjct: 481 AFHG 484
>Os03g0666200 Pleckstrin homology-type domain containing protein
Length = 500
Score = 533 bits (1372), Expect = e-151, Method: Compositional matrix adjust.
Identities = 279/495 (56%), Positives = 340/495 (68%), Gaps = 11/495 (2%)
Query: 1 MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGK 60
MA++GSS E ESSLE+V+RQLSS S R+LLQGPLLKRS+TLRKWNERWVILDP +GK
Sbjct: 1 MATNGSSPRARETESSLEKVKRQLSSGSGRYLLQGPLLKRSETLRKWNERWVILDPTSGK 60
Query: 61 MEYKIRRSDAAVRGIIVFDSTSTVTLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPS 120
MEYKIRR++ A++G I+FD++ST+TLSP+NF G+PKYDGCCFYIGTPQKK+YFLCAETP
Sbjct: 61 MEYKIRRNETAIKGTIIFDASSTITLSPVNFQGMPKYDGCCFYIGTPQKKDYFLCAETPG 120
Query: 121 AARAWVSTLHASQLVLQAHKEAVNSLGGNG-PTKLGKXXXXXXXXXXXXIEASKEVEAAM 179
AA+AWVSTL A+QLVLQAHKEAVNSL GNG P LG +EA+KE+EAAM
Sbjct: 121 AAKAWVSTLLATQLVLQAHKEAVNSLAGNGSPATLGTVATAVANANATALEATKEIEAAM 180
Query: 180 KVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQX 239
KVS+RAALG N +GQLDDLTIM ETLRVKD+EL L +DIRARDATI+EI +KL
Sbjct: 181 KVSMRAALGLGANNPKEGQLDDLTIMKETLRVKDEELQNLAKDIRARDATIKEIANKLTE 240
Query: 240 XXXXXXXXXXXXHSIDEQRRFLSSELERLKQDQEKQIEFXXXXXXXXXXXXXXXXXXXXH 299
H++DEQRR L SE+ERL+Q E+Q+E
Sbjct: 241 TAEAAEAAASAAHTMDEQRRLLCSEIERLRQAMERQMEQSMLKLRQSEEKVISLSKEKDQ 300
Query: 300 LLKERDSALQEAQMWRSELGKARGNAVILXXXXXXXXXXXXXXXXDADMRINDAASRLDS 359
LLKERD+ALQEA MWR+ELGKAR AVI DA RI +AA +L +
Sbjct: 301 LLKERDAALQEAHMWRTELGKAREQAVIQEATIARADEKVRASEADAAARIKEAAEKLHA 360
Query: 360 ATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTS------SKHVDMEDDNVDKA 413
KEKEEL++LV LQ Q++ + +STKQVCEERSE CS + +KHVD DD+VDKA
Sbjct: 361 VEKEKEELLSLVGILQSQVQREQSSTKQVCEERSESCSGTDNSPPLTKHVDASDDDVDKA 420
Query: 414 CLSDTDPIPITENI--VDLDDDGVDIPTIGVTEWNNPHSSE--VSDVREVTTEPEDNSLD 469
C+SD+ + ++ + V L DGVDI IG EW + SE ++DVREV+ E E SLD
Sbjct: 421 CVSDSRSVLVSNDNTEVQLAVDGVDIRPIGDAEWGSFQQSEALIADVREVSPESEGGSLD 480
Query: 470 IPVDSQPVSENAFHG 484
IPV + P + G
Sbjct: 481 IPVVNPPPVSDHIQG 495
>Os05g0128700
Length = 683
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 206 METLRVKDDELHQLLQDIRARDATIREITDKLQXXXXXXXXXXXXXHSIDEQRRFLSSEL 265
+ETLRVKD+EL L +IRARDATI++I DKL H++D R L SE+
Sbjct: 533 LETLRVKDEELQNLANNIRARDATIKKIADKLTQTAEAAEAAASVAHTLDGHRILLCSEI 592
Query: 266 ERLKQDQEKQIEFXXXXXXXXXXXXXXXXXXXXHLLKERDSALQEAQMWRSELGKARGNA 325
ERL+ ++ + ++ LLKERD+ALQEA MWR+ELGKAR A
Sbjct: 593 ERLRHYKQWKDKW--------NNPCSRLSKEKDQLLKERDAALQEAHMWRTELGKAREQA 644
Query: 326 VI 327
V+
Sbjct: 645 VV 646
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,456,627
Number of extensions: 497994
Number of successful extensions: 1158
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1148
Number of HSP's successfully gapped: 3
Length of query: 484
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 379
Effective length of database: 11,553,331
Effective search space: 4378712449
Effective search space used: 4378712449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)