Os07g0138100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pleckstrin homology-type domain containing protein.
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Os07g0138100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pleckstrin homology-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.39 | 0.334 | 10.7 | -1.75 | 0.597 | 0.178 | 1.07 | -3.77 | 0.12 | 2.84 | 10.36 | 1079 | -- | -- |
| 61.42 | 0.365 | 10.6 | -1.03 | 0.603 | 0.169 | 0.584 | -- | 0.305 | 2.93 | 3.062 | 6649 | -- | -- |
| 51.6 | 0.335 | 10.7 | -1.82 | 0.62 | 0.153 | -- | -3.7 | 0.103 | 2.83 | 10.93 | 1744 | -- | -- |
| 62.56 | 0.368 | 10.6 | -1.04 | 0.604 | 0.173 | -- | -- | 0.3 | 2.86 | 5.962 | 6647 | -- | -- |
| 66.53 | 0.382 | 10.6 | -1.24 | -- | -0.717 | -- | -3.31 | 0.337 | -- | 11.67 | 1847 | -- | -- |
| 61.89 | 0.369 | 10.5 | -0.944 | 0.61 | -- | 0.584 | -- | 0.346 | 2.89 | -- | -- | -- | -- |
| 63.04 | 0.372 | 10.6 | -0.957 | 0.611 | -- | -- | -- | 0.343 | 2.81 | -- | -- | -- | -- |
| 60.14 | 0.363 | 10.5 | -0.797 | -- | -1.04 | -- | -- | 0.405 | -- | 25.6 | 41 | -- | -- |
| 69.05 | 0.387 | 10.5 | -- | 0.62 | -0.686 | -- | -- | 0.654 | 2.77 | -7.347 | 47520 | -- | -- |
| 84.64 | 0.43 | 10.5 | -0.931 | -- | -- | -- | -- | 0.358 | -- | -- | -- | -- | -- |
| 87.21 | 0.437 | 10.5 | -- | 0.592 | -- | -- | -- | 0.449 | 2.8 | -- | -- | -- | -- |
| 76.33 | 0.407 | 10.5 | -- | -- | -1.16 | -- | -- | 0.499 | -- | 25.48 | 37 | -- | -- |
| 107.53 | 0.484 | 10.5 | -- | -- | -- | -- | -- | 0.462 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.64 | temperature | 30 | 270 | > th | dose independent | sin | 4 | NA |
| 3 | 49.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 4 | 49.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 5 | 49.93 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 21 |
| 6 | 49.93 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 8 | 49.95 | temperature | 15 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 16 | 50.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 18 | 50.07 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 19 | 50.08 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 7 |
| 64 | 50.17 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 78 | 50.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 6 |
| 102 | 50.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 116 | 50.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 15 |
| 118 | 50.39 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 119 | 50.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 150 | 50.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 168 | 50.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 186 | 50.49 | temperature | 10 | 1440 | > th | dose dependent | sin | 1 | NA |
| 227 | 50.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 241 | 50.53 | temperature | 30 | 270 | < th | dose independent | sin | 3 | NA |
| 290 | 50.58 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 547 | 50.74 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 578 | 50.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 682 | 50.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 728 | 50.83 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 772 | 50.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 982 | 50.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 983 | 50.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 4 |