BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0138100 Os07g0138100|AK059496
(484 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G30880.1 | chr2:13142926-13145718 REVERSE LENGTH=505 444 e-125
>AT2G30880.1 | chr2:13142926-13145718 REVERSE LENGTH=505
Length = 504
Score = 444 bits (1141), Expect = e-125, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 319/503 (63%), Gaps = 21/503 (4%)
Query: 1 MASSGSST-VVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATG 59
MAS+G+S +V E+SL++++RQL+S S R+LLQGPL KRS+TLRKWNERWVILDP TG
Sbjct: 1 MASNGASPRIVDATENSLDKIKRQLASGSGRNLLQGPLFKRSETLRKWNERWVILDPTTG 60
Query: 60 KMEYKIRRSDAAVRGIIVFDSTSTVTLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETP 119
KMEYK RR++ ++G I+FD ST+++SP+NF GLPKY+GCC YIGTPQKK+YFLCAETP
Sbjct: 61 KMEYKTRRNEPTIKGTILFDENSTISISPVNFQGLPKYNGCCIYIGTPQKKDYFLCAETP 120
Query: 120 SAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKXXXXXXXXXXXXIEASKEVEAAM 179
AA+AWV+TLHA+QLVL+AHKEAV SL G+G LG +E S+E++AAM
Sbjct: 121 GAAKAWVTTLHATQLVLKAHKEAVESLSGSGSATLGTVATVVAAANSTALECSREIQAAM 180
Query: 180 KVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQX 239
++SLR AL T NK G LDDLTIM ETLRVKD+ELH L +++R+RD+ I+EI DKL
Sbjct: 181 QISLRNALKITPNKPIDGPLDDLTIMKETLRVKDEELHNLARELRSRDSMIKEIADKLSE 240
Query: 240 XXXXXXXXXXXXHSIDEQRRFLSSELERLKQDQEKQIEFXXXXXXXXXXXXXXXXXXXXH 299
H++DEQR+ + E ERL D ++Q E
Sbjct: 241 TAEAAVAAASAAHTMDEQRKIVCVEFERLTTDSQRQQEATKLKLKELEEKTFTLSKEKDQ 300
Query: 300 LLKERDSALQEAQMWRSELGKARGNAVILXXXXXXXXXXXXXXXXDADMRINDAASRLDS 359
L+KERD+ALQEA MWRSELGKAR VIL + + +A+ R +
Sbjct: 301 LVKERDAALQEAHMWRSELGKARERVVILEGAVVRAEEKVRVAEASGEAKSKEASQREAT 360
Query: 360 ATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCS--TSSKHVDMEDDNVDKACL-- 415
A EK+EL+A V+ LQ Q++ Q TKQVCEE++E + S + NVDKACL
Sbjct: 361 AWTEKQELLAYVNMLQTQLQRQQLETKQVCEEKTESTNGEASLPMTKETEKNVDKACLSI 420
Query: 416 SDTDPIPITENIVDLDDDGV--DIPTIGVTEWNNPHSSE--VSDVREVTTEPE---DNSL 468
S T IP EN+V + ++ V P +G EWN+ ++E VSDVRE++ E E NSL
Sbjct: 421 SRTASIP-GENVVHMSEEQVVNAQPPVGENEWNDIQATEARVSDVREISAETERDRRNSL 479
Query: 469 DIPVDSQ--------PVSENAFH 483
DIPV S P SE+ H
Sbjct: 480 DIPVVSPEPNVPRNDPPSESFHH 502
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,656,926
Number of extensions: 324393
Number of successful extensions: 917
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 911
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 382
Effective length of database: 8,310,137
Effective search space: 3174472334
Effective search space used: 3174472334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)