BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0136500 Os07g0136500|011-084-F06
         (117 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0136500  Conserved hypothetical protein                      207   1e-54
Os07g0136300  Conserved hypothetical protein                       97   3e-21

>Os07g0136500 Conserved hypothetical protein
          Length = 117

 Score =  207 bits (527), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 102/117 (87%)

Query: 1   PPSQPYSRSSVRRWHGGYGXXXXXXXXXXXXXXXHHLEDKLRGTTSPKTTAPPGNGRGSY 60
           PPSQPYSRSSVRRWHGGYG               HHLEDKLRGTTSPKTTAPPGNGRGSY
Sbjct: 1   PPSQPYSRSSVRRWHGGYGAALSLRRAPPSSRSLHHLEDKLRGTTSPKTTAPPGNGRGSY 60

Query: 61  FKDNHPTFAELVQRDTDRRSFNRMLVAGAASGYAVALVIMLSLRRSVKEDLRNNIYD 117
           FKDNHPTFAELVQRDTDRRSFNRMLVAGAASGYAVALVIMLSLRRSVKEDLRNNIYD
Sbjct: 61  FKDNHPTFAELVQRDTDRRSFNRMLVAGAASGYAVALVIMLSLRRSVKEDLRNNIYD 117



>Os07g0136300 Conserved hypothetical protein
          Length = 115

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 65/83 (78%)

Query: 35  HHLEDKLRGTTSPKTTAPPGNGRGSYFKDNHPTFAELVQRDTDRRSFNRMLVAGAASGYA 94
           H LEDKLRGTTSPKTTAP   GR SYF++N   FAELV+RD  RR F R+++AGAAS YA
Sbjct: 33  HSLEDKLRGTTSPKTTAPTDQGRVSYFEENPELFAELVKRDAARRMFTRLVLAGAASAYA 92

Query: 95  VALVIMLSLRRSVKEDLRNNIYD 117
            AL ++ S+R SVKE+LR NIYD
Sbjct: 93  GALFVVSSMRDSVKEELRKNIYD 115



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,919,542
Number of extensions: 143319
Number of successful extensions: 317
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 2
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)