Os07g0136500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0136500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.12 | 0.453 | 3.21 | 0.131 | 0.152 | -0.489 | -0.159 | -0.321 | 0.0241 | 0.933 | 10.78 | 1323 | -- | -- |
| 93.21 | 0.45 | 3.2 | 0.196 | 0.153 | -0.487 | -0.18 | -- | 0.0436 | 1.01 | 10.23 | 1338 | -- | -- |
| 93.21 | 0.45 | 3.21 | 0.123 | 0.156 | -0.491 | -- | -0.384 | 0.0214 | 0.67 | 10.75 | 1299 | -- | -- |
| 93.22 | 0.45 | 3.2 | 0.233 | 0.164 | -0.46 | -- | -- | 0.0492 | 0.408 | 10.27 | 2552 | -- | -- |
| 94.39 | 0.452 | 3.21 | 0.166 | -- | -0.476 | -- | -0.202 | 0.0326 | -- | 9.657 | 1660 | -- | -- |
| 97.25 | 0.462 | 3.22 | 0.0465 | 0.112 | -- | -0.197 | -- | -0.0465 | 0.717 | -- | -- | -- | -- |
| 97.4 | 0.462 | 3.22 | 0.0543 | 0.113 | -- | -- | -- | -0.0452 | 0.121 | -- | -- | -- | -- |
| 94.4 | 0.453 | 3.2 | 0.209 | -- | -0.432 | -- | -- | 0.0466 | -- | 16.7 | 1664 | -- | -- |
| 93.83 | 0.451 | 3.21 | -- | 0.164 | -0.317 | -- | -- | 0.0029 | 0.384 | 21.96 | 2544 | -- | -- |
| 98.21 | 0.463 | 3.22 | 0.0579 | -- | -- | -- | -- | -0.0435 | -- | -- | -- | -- | -- |
| 97.47 | 0.462 | 3.22 | -- | 0.114 | -- | -- | -- | -0.0512 | 0.147 | -- | -- | -- | -- |
| 95.2 | 0.454 | 3.21 | -- | -- | -0.276 | -- | -- | 0.00428 | -- | 22.21 | 1504 | -- | -- |
| 98.29 | 0.463 | 3.22 | -- | -- | -- | -- | -- | -0.0499 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.41 | wind | 1.0 | 270 | < th | dose independent | rect. | 22 | 1 |
| 3 | 88.74 | wind | 3.0 | 30 | < th | dose dependent | rect. | 22 | 5 |
| 9 | 89.57 | wind | 1.0 | 270 | < th | dose independent | rect. | 14 | 10 |
| 13 | 89.70 | wind | 1.0 | 270 | < th | dose independent | rect. | 11 | 13 |
| 14 | 89.70 | wind | 3.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 15 | 89.73 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 17 | 89.77 | wind | 1.0 | 270 | < th | dose independent | rect. | 19 | 5 |
| 18 | 89.77 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 22 | 89.79 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 24 | 89.80 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 62 | 89.87 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 63 | 89.88 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 73 | 89.88 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 22 | 3 |
| 79 | 89.90 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 98 | 89.91 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 123 | 89.94 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 141 | 89.95 | wind | 9.0 | 270 | > th | dose independent | sin | 13 | NA |
| 158 | 89.95 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 188 | 89.97 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 207 | 89.97 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 22 | 21 |
| 215 | 89.98 | atmosphere | 1005.0 | 43200 | < th | dose independent | no | NA | NA |
| 238 | 89.99 | wind | 3.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 250 | 89.99 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 277 | 90.00 | wind | 1.0 | 270 | < th | dose independent | rect. | 21 | 3 |
| 284 | 90.00 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 366 | 90.02 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 371 | 90.02 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 1 |
| 389 | 90.04 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 407 | 90.04 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 424 | 90.05 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 428 | 90.05 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 5 |
| 432 | 90.06 | wind | 9.0 | 270 | > th | dose independent | rect. | 13 | 13 |
| 458 | 90.06 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 461 | 90.07 | wind | 9.0 | 270 | > th | dose independent | rect. | 12 | 11 |
| 469 | 90.07 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 474 | 90.08 | wind | 9.0 | 270 | < th | dose independent | sin | 12 | NA |
| 477 | 90.08 | wind | 9.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 482 | 90.08 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 15 |
| 494 | 90.09 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 11 |
| 496 | 90.09 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 13 |
| 532 | 90.11 | wind | 9.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 551 | 90.11 | wind | 9.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 553 | 90.11 | wind | 9.0 | 270 | > th | dose dependent | rect. | 16 | 2 |
| 558 | 90.11 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 15 | 10 |
| 565 | 90.12 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 592 | 90.13 | wind | 9.0 | 270 | > th | dose independent | rect. | 16 | 10 |
| 652 | 90.15 | wind | 9.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 702 | 90.16 | atmosphere | 1000.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 759 | 90.18 | radiation | 40.0 | 720 | < th | dose independent | rect. | 13 | 10 |
| 810 | 90.20 | wind | 9.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 813 | 90.20 | wind | 9.0 | 270 | > th | dose independent | rect. | 16 | 3 |
| 821 | 90.20 | wind | 9.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 832 | 90.21 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 844 | 90.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 870 | 90.22 | wind | 9.0 | 270 | > th | dose dependent | rect. | 16 | 10 |
| 874 | 90.22 | wind | 9.0 | 270 | > th | dose dependent | rect. | 13 | 13 |
| 911 | 90.23 | wind | 9.0 | 270 | > th | dose dependent | rect. | 13 | 10 |
| 924 | 90.24 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 935 | 90.24 | wind | 9.0 | 270 | > th | dose dependent | rect. | 16 | 7 |
| 954 | 90.25 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 958 | 90.25 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 24 | 7 |
| 967 | 90.26 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 975 | 90.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 4 |
| 977 | 90.26 | wind | 9.0 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 985 | 90.26 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 10 |