BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0136300 Os07g0136300|AK064609
         (115 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0136300  Conserved hypothetical protein                      157   2e-39
Os07g0136500  Conserved hypothetical protein                       93   4e-20

>Os07g0136300 Conserved hypothetical protein
          Length = 115

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/115 (73%), Positives = 84/115 (73%)

Query: 1   MAAVALRSLARKAMXXXXXXXXXXXXXXXXXXXXXEDKLRGTTSPKTTAPTDQGRVSYFE 60
           MAAVALRSLARKAM                     EDKLRGTTSPKTTAPTDQGRVSYFE
Sbjct: 1   MAAVALRSLARKAMPAPATLRRAPPPSRSLHRHSLEDKLRGTTSPKTTAPTDQGRVSYFE 60

Query: 61  ENPELFAELVKRDAARRMFTRLVLXXXXXXXXXXLFVVSSMRDSVKEELRKNIYD 115
           ENPELFAELVKRDAARRMFTRLVL          LFVVSSMRDSVKEELRKNIYD
Sbjct: 61  ENPELFAELVKRDAARRMFTRLVLAGAASAYAGALFVVSSMRDSVKEELRKNIYD 115



>Os07g0136500 Conserved hypothetical protein
          Length = 117

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 55/80 (68%)

Query: 36  EDKLRGTTSPKTTAPTDQGRVSYFEENPELFAELVKRDAARRMFTRLVLXXXXXXXXXXL 95
           EDKLRGTTSPKTTAP   GR SYF++N   FAELV+RD  RR F R+++          L
Sbjct: 38  EDKLRGTTSPKTTAPPGNGRGSYFKDNHPTFAELVQRDTDRRSFNRMLVAGAASGYAVAL 97

Query: 96  FVVSSMRDSVKEELRKNIYD 115
            ++ S+R SVKE+LR NIYD
Sbjct: 98  VIMLSLRRSVKEDLRNNIYD 117



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.130    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,200,372
Number of extensions: 55164
Number of successful extensions: 112
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)