BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0119600 Os07g0119600|Os07g0119600
         (182 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0119600  Conserved hypothetical protein                      354   2e-98
Os07g0119100  Conserved hypothetical protein                       83   9e-17

>Os07g0119600 Conserved hypothetical protein
          Length = 182

 Score =  354 bits (908), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 175/182 (96%), Positives = 175/182 (96%)

Query: 1   MAMMRSALARVFRRSASGSCSAPAGVCRRRPEIIDQAPPLPSLRPAAMPHMSVXXXXXXX 60
           MAMMRSALARVFRRSASGSCSAPAGVCRRRPEIIDQAPPLPSLRPAAMPHMSV       
Sbjct: 1   MAMMRSALARVFRRSASGSCSAPAGVCRRRPEIIDQAPPLPSLRPAAMPHMSVAAAAAAA 60

Query: 61  PTRRLLQGPRQFLVISEATEGVKWAGQKRFFSMERNANGFKLMESARLAVKKIKALGNAR 120
           PTRRLLQGPRQFLVISEATEGVKWAGQKRFFSMERNANGFKLMESARLAVKKIKALGNAR
Sbjct: 61  PTRRLLQGPRQFLVISEATEGVKWAGQKRFFSMERNANGFKLMESARLAVKKIKALGNAR 120

Query: 121 IEIDPRNEFYVVAVATAISLWLMSRQYRSLGDPTFPGGSMKKLQAWKRVSKLNSGKSNNA 180
           IEIDPRNEFYVVAVATAISLWLMSRQYRSLGDPTFPGGSMKKLQAWKRVSKLNSGKSNNA
Sbjct: 121 IEIDPRNEFYVVAVATAISLWLMSRQYRSLGDPTFPGGSMKKLQAWKRVSKLNSGKSNNA 180

Query: 181 DE 182
           DE
Sbjct: 181 DE 182



>Os07g0119100 Conserved hypothetical protein
          Length = 187

 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 79/151 (52%), Gaps = 19/151 (12%)

Query: 1   MAMMRSALARVFRRSASGSCSAPAGVCRRRPEIIDQAPPLPSLRPAAMPHMSVXXXXXXX 60
           MAM+RSAL ++ RR +  S             +I QAPPLPSL PAA    +        
Sbjct: 1   MAMVRSALGKISRRLSGSS------------AVICQAPPLPSLHPAAQLMTTAFSSPAAA 48

Query: 61  PTRRL-----LQGPRQFLVISEATEGVKWAGQKRFFSMERNANGFKLMESARLAVKKIKA 115
              R+     LQG +    I + TE ++WAGQKRFFS+E  A   KLMESAR +VK++ A
Sbjct: 49  AAARVRRIPNLQGLQHPPFICKGTERMQWAGQKRFFSVEAKAKDAKLMESARSSVKRLMA 108

Query: 116 LGNARIEIDPRNEFYVVAVATAISLWLMSRQ 146
             N   + +PRN   V+ +   + L +  R+
Sbjct: 109 WMNE--QANPRNTAIVLTIINVVYLGIFIRE 137



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,027,501
Number of extensions: 226638
Number of successful extensions: 791
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 87
Effective length of database: 12,075,471
Effective search space: 1050565977
Effective search space used: 1050565977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)