BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0119100 Os07g0119100|Os07g0119100
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0119100  Conserved hypothetical protein                      379   e-106
Os07g0119600  Conserved hypothetical protein                       83   1e-16

>Os07g0119100 Conserved hypothetical protein
          Length = 187

 Score =  379 bits (973), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/187 (96%), Positives = 181/187 (96%)

Query: 1   MAMVRSALGKISRRLSGSSAVICQAPPLPSLHPAAQLMTTAFSSPXXXXXXRVRRIPNLQ 60
           MAMVRSALGKISRRLSGSSAVICQAPPLPSLHPAAQLMTTAFSSP      RVRRIPNLQ
Sbjct: 1   MAMVRSALGKISRRLSGSSAVICQAPPLPSLHPAAQLMTTAFSSPAAAAAARVRRIPNLQ 60

Query: 61  GLQHPPFICKGTERMQWAGQKRFFSVEAKAKDAKLMESARSSVKRLMAWMNEQANPRNTA 120
           GLQHPPFICKGTERMQWAGQKRFFSVEAKAKDAKLMESARSSVKRLMAWMNEQANPRNTA
Sbjct: 61  GLQHPPFICKGTERMQWAGQKRFFSVEAKAKDAKLMESARSSVKRLMAWMNEQANPRNTA 120

Query: 121 IVLTIINVVYLGIFIRECLRSDEHAKDCTADDNGDHNIYNTNYGLGHKGPQCRHALVPEF 180
           IVLTIINVVYLGIFIRECLRSDEHAKDCTADDNGDHNIYNTNYGLGHKGPQCRHALVPEF
Sbjct: 121 IVLTIINVVYLGIFIRECLRSDEHAKDCTADDNGDHNIYNTNYGLGHKGPQCRHALVPEF 180

Query: 181 VHTLRFG 187
           VHTLRFG
Sbjct: 181 VHTLRFG 187



>Os07g0119600 Conserved hypothetical protein
          Length = 182

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 19/151 (12%)

Query: 1   MAMVRSALGKISRRLSGSS------------AVICQAPPLPSLHPAAQLMTTAFSSPXXX 48
           MAM+RSAL ++ RR +  S             +I QAPPLPSL PAA    +  ++    
Sbjct: 1   MAMMRSALARVFRRSASGSCSAPAGVCRRRPEIIDQAPPLPSLRPAAMPHMSVAAAAAAA 60

Query: 49  XXXRVRRIPNLQGLQHPPFICKGTERMQWAGQKRFFSVEAKAKDAKLMESARSSVKRLMA 108
              R+     LQG +    I + TE ++WAGQKRFFS+E  A   KLMESAR +VK++ A
Sbjct: 61  PTRRL-----LQGPRQFLVISEATEGVKWAGQKRFFSMERNANGFKLMESARLAVKKIKA 115

Query: 109 WMNE--QANPRNTAIVLTIINVVYLGIFIRE 137
             N   + +PRN   V+ +   + L +  R+
Sbjct: 116 LGNARIEIDPRNEFYVVAVATAISLWLMSRQ 146



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,334,089
Number of extensions: 237974
Number of successful extensions: 634
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)