BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0110300 Os07g0110300|AK073241
         (181 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0110300  Similar to Adrenodoxin                              375   e-105
Os09g0437900  Similar to Adrenodoxin                              243   7e-65

>Os07g0110300 Similar to Adrenodoxin
          Length = 181

 Score =  375 bits (964), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MLSRISQLGARLLRENRAVGNLASSTTSYYRGQLSRRFVPTKNILFSTATTSSDRDDGSQ 60
           MLSRISQLGARLLRENRAVGNLASSTTSYYRGQLSRRFVPTKNILFSTATTSSDRDDGSQ
Sbjct: 1   MLSRISQLGARLLRENRAVGNLASSTTSYYRGQLSRRFVPTKNILFSTATTSSDRDDGSQ 60

Query: 61  SKEKISVTFVNKDGTEQTISVPVGMSILEAAHENDIELEGACEGSLACSTCHVIVMDVNY 120
           SKEKISVTFVNKDGTEQTISVPVGMSILEAAHENDIELEGACEGSLACSTCHVIVMDVNY
Sbjct: 61  SKEKISVTFVNKDGTEQTISVPVGMSILEAAHENDIELEGACEGSLACSTCHVIVMDVNY 120

Query: 121 YNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMRLALPAATRNFAVDGFVPKP 180
           YNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMRLALPAATRNFAVDGFVPKP
Sbjct: 121 YNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMRLALPAATRNFAVDGFVPKP 180

Query: 181 H 181
           H
Sbjct: 181 H 181



>Os09g0437900 Similar to Adrenodoxin
          Length = 181

 Score =  243 bits (619), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 117/181 (64%), Positives = 139/181 (76%)

Query: 1   MLSRISQLGARLLRENRAVGNLASSTTSYYRGQLSRRFVPTKNILFSTATTSSDRDDGSQ 60
           ML+R+S+LG   LR   A G  + ++  +    ++          F + T ++  D  S+
Sbjct: 1   MLARVSRLGLHALRRATAPGQNSLASRRHEAEAVTSHVNHLGKTFFCSNTNATSSDRSSE 60

Query: 61  SKEKISVTFVNKDGTEQTISVPVGMSILEAAHENDIELEGACEGSLACSTCHVIVMDVNY 120
           S+ KISVTFV+KDG E+ + VP+GMS+LEAAHENDIELEGACEGSLACSTCHVIV DV+Y
Sbjct: 61  SEAKISVTFVDKDGEEKLVKVPIGMSMLEAAHENDIELEGACEGSLACSTCHVIVTDVDY 120

Query: 121 YNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMRLALPAATRNFAVDGFVPKP 180
           YNKLEDP DEENDMLDLAFGLTETSRLGCQVIA PELDGMRLALP+ATRNFAVDG+V K 
Sbjct: 121 YNKLEDPVDEENDMLDLAFGLTETSRLGCQVIASPELDGMRLALPSATRNFAVDGYVAKS 180

Query: 181 H 181
           H
Sbjct: 181 H 181



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,752,446
Number of extensions: 221874
Number of successful extensions: 559
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 2
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)