Os09g0437900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adrenodoxin.
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Os09g0437900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adrenodoxin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.9 | 0.517 | 3.48 | -0.908 | 0.332 | 1.19 | -0.116 | 0.814 | -0.365 | 10.4 | 20.64 | 14075 | -- | -- |
| 121.5 | 0.513 | 3.52 | -0.921 | 0.324 | 0.978 | -0.116 | -- | -0.363 | 10.3 | 20.6 | 14075 | -- | -- |
| 120.67 | 0.512 | 3.48 | -0.91 | 0.33 | 1.21 | -- | 0.863 | -0.358 | 10.5 | 20.2 | 14130 | -- | -- |
| 121.52 | 0.513 | 3.52 | -0.971 | 0.326 | 1 | -- | -- | -0.382 | 10.5 | 20.7 | 14118 | -- | -- |
| 127.13 | 0.525 | 3.48 | -0.931 | -- | 1.25 | -- | 0.994 | -0.349 | -- | 20.2 | 14376 | -- | -- |
| 137.49 | 0.55 | 3.44 | -0.0832 | 0.311 | -- | -0.211 | -- | -0.0167 | 9.99 | -- | -- | -- | -- |
| 137.63 | 0.549 | 3.44 | -0.0904 | 0.311 | -- | -- | -- | -0.0165 | 10.3 | -- | -- | -- | -- |
| 128.03 | 0.527 | 3.53 | -0.969 | -- | 0.983 | -- | -- | -0.381 | -- | 20.7 | 14372 | -- | -- |
| 125.11 | 0.521 | 3.46 | -- | 0.389 | 0.546 | -- | -- | -0.129 | 10.2 | 29.2 | 9393 | -- | -- |
| 143.51 | 0.56 | 3.45 | -0.0953 | -- | -- | -- | -- | -0.0173 | -- | -- | -- | -- | -- |
| 137.84 | 0.549 | 3.44 | -- | 0.311 | -- | -- | -- | -0.00639 | 10.3 | -- | -- | -- | -- |
| 131.14 | 0.533 | 3.48 | -- | -- | 0.554 | -- | -- | -0.168 | -- | 29.3 | 8819 | -- | -- |
| 143.75 | 0.56 | 3.45 | -- | -- | -- | -- | -- | -0.00677 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.28 | wind | 5e+00 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 2 | 117.43 | wind | 5e+00 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 3 | 117.54 | wind | 5e+00 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 4 | 117.64 | wind | 5e+00 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 14 | 118.31 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 20 | 118.74 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 24 | 118.86 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 25 | 118.88 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 28 | 118.89 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 29 | 118.89 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 14 | 3 |
| 42 | 119.06 | wind | 5e+00 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 44 | 119.10 | temperature | 2e+01 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 46 | 119.11 | wind | 5e+00 | 14400 | < th | dose independent | rect. | 20 | 17 |
| 65 | 119.18 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 66 | 119.18 | temperature | 2e+01 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 79 | 119.22 | atmosphere | 1e+03 | 43200 | < th | dose dependent | sin | 21 | NA |
| 154 | 119.36 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 155 | 119.36 | humidity | 8e+01 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 162 | 119.37 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 163 | 119.37 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 190 | 119.40 | temperature | 2e+01 | 14400 | > th | dose independent | sin | 17 | NA |
| 218 | 119.44 | temperature | 2e+01 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 225 | 119.45 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 226 | 119.45 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 318 | 119.55 | atmosphere | 1e+03 | 43200 | < th | dose independent | sin | 1 | NA |
| 330 | 119.56 | atmosphere | 1e+03 | 43200 | > th | dose independent | sin | 1 | NA |
| 403 | 119.61 | temperature | 2e+01 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 443 | 119.64 | temperature | 2e+01 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 495 | 119.67 | temperature | 2e+01 | 14400 | < th | dose independent | sin | 17 | NA |
| 591 | 119.72 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 675 | 119.76 | wind | 5e+00 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 839 | 119.85 | atmosphere | 1e+03 | 43200 | < th | dose independent | no | NA | NA |
| 880 | 119.86 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 901 | 119.87 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 955 | 119.90 | atmosphere | 1e+03 | 43200 | > th | dose independent | no | NA | NA |