BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0110000 Os07g0110000|AK066728
         (95 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0110000  Hypothetical protein                                197   2e-51
Os07g0110500  Conserved hypothetical protein                       80   4e-16

>Os07g0110000 Hypothetical protein
          Length = 95

 Score =  197 bits (500), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MAGGYGVEWFQVVYGKAEQASAVLSQHDLVRESGESLILERRKKIGTHNIRHLWMVAAFA 60
          MAGGYGVEWFQVVYGKAEQASAVLSQHDLVRESGESLILERRKKIGTHNIRHLWMVAAFA
Sbjct: 1  MAGGYGVEWFQVVYGKAEQASAVLSQHDLVRESGESLILERRKKIGTHNIRHLWMVAAFA 60

Query: 61 MSGYLFGAGVATLIKGNNRRTPEAAGTKEDTTDEH 95
          MSGYLFGAGVATLIKGNNRRTPEAAGTKEDTTDEH
Sbjct: 61 MSGYLFGAGVATLIKGNNRRTPEAAGTKEDTTDEH 95



>Os07g0110500 Conserved hypothetical protein
          Length = 80

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 44/66 (66%)

Query: 9  WFQVVYGKAEQASAVLSQHDLVRESGESLILERRKKIGTHNIRHLWMVAAFAMSGYLFGA 68
          W +   GK      +LS+ D+VRES ESLILER KKIGTHN +H WMVA   +SGYLFGA
Sbjct: 1  WNERNLGKVRSIEKILSKRDMVRESSESLILERMKKIGTHNTKHAWMVAGVTISGYLFGA 60

Query: 69 GVATLI 74
              L+
Sbjct: 61 AFVALL 66



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,335,144
Number of extensions: 113125
Number of successful extensions: 211
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 2
Length of query: 95
Length of database: 17,035,801
Length adjustment: 64
Effective length of query: 31
Effective length of database: 13,694,105
Effective search space: 424517255
Effective search space used: 424517255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)