Os07g0110500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0110500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.35 | 0.178 | 12.5 | -0.61 | 0.0796 | -0.309 | -0.535 | -0.536 | 0.0139 | 16.2 | 49 | 6821 | -- | -- |
| 14.43 | 0.177 | 12.5 | -0.61 | 0.101 | -0.439 | -0.488 | -- | 0.0144 | 16 | 44 | 8101 | -- | -- |
| 14.96 | 0.18 | 12.5 | -0.613 | 0.0799 | -0.293 | -- | -0.556 | 0.0124 | 13.8 | 49 | 6817 | -- | -- |
| 15 | 0.18 | 12.5 | -0.603 | 0.102 | -0.424 | -- | -- | 0.0146 | 13.9 | 43.4 | 8441 | -- | -- |
| 15.47 | 0.183 | 12.5 | -0.618 | -- | -0.318 | -- | -0.501 | 0.00874 | -- | 49.45 | 6819 | -- | -- |
| 17.74 | 0.197 | 12.5 | -0.739 | 0.0885 | -- | -0.5 | -- | 0.0354 | 16.3 | -- | -- | -- | -- |
| 18.18 | 0.2 | 12.5 | -0.743 | 0.103 | -- | -- | -- | 0.0327 | 13.7 | -- | -- | -- | -- |
| 15.63 | 0.184 | 12.5 | -0.606 | -- | -0.425 | -- | -- | 0.013 | -- | 43.43 | 8430 | -- | -- |
| 23 | 0.223 | 12.5 | -- | 0.0962 | -0.645 | -- | -- | 0.0575 | 14 | 42.12 | 8195 | -- | -- |
| 18.82 | 0.203 | 12.5 | -0.747 | -- | -- | -- | -- | 0.0305 | -- | -- | -- | -- | -- |
| 32.71 | 0.268 | 12.5 | -- | 0.117 | -- | -- | -- | 0.115 | 13.9 | -- | -- | -- | -- |
| 23.69 | 0.227 | 12.5 | -- | -- | -0.655 | -- | -- | 0.0632 | -- | 42.67 | 7937 | -- | -- |
| 33.54 | 0.27 | 12.5 | -- | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 14.40 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 3 | 14.43 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 5 | 14.43 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 8 | 14.44 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 10 | 14.44 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 12 | 14.45 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 13 | 14.45 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 15 | 14.45 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 3 |
| 19 | 14.46 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 20 | 14.46 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 21 |
| 25 | 14.47 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 15 | 8 |
| 32 | 14.48 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 34 | 14.48 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 37 | 14.48 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 66 | 14.49 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 81 | 14.50 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 90 | 14.50 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 21 |
| 91 | 14.51 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 92 | 14.51 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 94 | 14.51 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 101 | 14.51 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 103 | 14.51 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 106 | 14.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 124 | 14.52 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 153 | 14.53 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 201 | 14.54 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 242 | 14.55 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 300 | 14.56 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 378 | 14.58 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 388 | 14.58 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 22 | 7 |
| 394 | 14.58 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 424 | 14.59 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 442 | 14.59 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 448 | 14.59 | atmosphere | 1010.0 | 14400 | > th | dose dependent | sin | 18 | NA |
| 480 | 14.59 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 7 | 15 |
| 501 | 14.60 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 542 | 14.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 602 | 14.61 | humidity | 50.0 | 4320 | < th | dose independent | sin | 19 | NA |
| 642 | 14.61 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 645 | 14.61 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 654 | 14.61 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 759 | 14.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 840 | 14.63 | humidity | 50.0 | 14400 | < th | dose dependent | no | NA | NA |
| 868 | 14.63 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 6 | 12 |