BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0724500 Os06g0724500|AK068831
(480 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0724500 WD40-like domain containing protein 907 0.0
Os10g0544500 WD40-like domain containing protein 367 e-102
Os03g0286800 Similar to WD and tetratricopeptide repeats pr... 343 2e-94
Os03g0187300 Quinonprotein alcohol dehydrogenase-like domai... 83 4e-16
>Os06g0724500 WD40-like domain containing protein
Length = 480
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/480 (91%), Positives = 441/480 (91%)
Query: 1 MPREGTRMAGLWEREVGCLPPKLFANSVMASQDFVRSLGVQKRLRKHRGCVNTISFNEDG 60
MPREGTRMAGLWEREVGCLPPKLFANSVMASQDFVRSLGVQKRLRKHRGCVNTISFNEDG
Sbjct: 1 MPREGTRMAGLWEREVGCLPPKLFANSVMASQDFVRSLGVQKRLRKHRGCVNTISFNEDG 60
Query: 61 SLLLSGSDDRAAVLWNWQEGTPTFAFHTGHSDNVFHALFMPFSGDRSIITCAADGQVRHS 120
SLLLSGSDDRAAVLWNWQEGTPTFAFHTGHSDNVFHALFMPFSGDRSIITCAADGQVRHS
Sbjct: 61 SLLLSGSDDRAAVLWNWQEGTPTFAFHTGHSDNVFHALFMPFSGDRSIITCAADGQVRHS 120
Query: 121 QIQEGGRVITNELVDTEVAVHKLAIEPGNPHTFFSCGDNGSVFLFDLREKYVAELFKCAE 180
QIQEGGRVITNELVDTEVAVHKLAIEPGNPHTFFSCGDNGSVFLFDLREKYVAELFKCAE
Sbjct: 121 QIQEGGRVITNELVDTEVAVHKLAIEPGNPHTFFSCGDNGSVFLFDLREKYVAELFKCAE 180
Query: 181 VDHFGGDTIELYAIAIDPRKPSCFAVAGSDEYVRIYDSRKIDVNGNSSFGRPIEYFCPPH 240
VDHFGGDTIELYAIAIDPRKPSCFAVAGSDEYVRIYDSRKIDVNGNSSFGRPIEYFCPPH
Sbjct: 181 VDHFGGDTIELYAIAIDPRKPSCFAVAGSDEYVRIYDSRKIDVNGNSSFGRPIEYFCPPH 240
Query: 241 MMGENKDGISGLAFSQTSELLASYSYDNIYLFSREHGLHFNNIEVGKRLLMDEIEGDCHI 300
MMGENKDGISGLAFSQTSELLASYSYDNIYLFSREHGLHFNNIEVGKRLLMDEIEGDCHI
Sbjct: 241 MMGENKDGISGLAFSQTSELLASYSYDNIYLFSREHGLHFNNIEVGKRLLMDEIEGDCHI 300
Query: 301 NTAPLPFCRDKLPAPQIFKGHRNKHTMKGVNFLGPNCDYVTTGSDCGRVFIWRKKDGELM 360
NTAPLPFCRDKLPAPQIFKGHRNKHTMKGVNFLGPNCDYVTTGSDCGRVFIWRKKDGELM
Sbjct: 301 NTAPLPFCRDKLPAPQIFKGHRNKHTMKGVNFLGPNCDYVTTGSDCGRVFIWRKKDGELM 360
Query: 361 RVMKGDKQIVNCVEQHPYGIVIANCGIDKDIKIWAPGGSENPDEVETDSCCSDISEXXXX 420
RVMKGDKQIVNCVEQHPYGIVIANCGIDKDIKIWAPGGSENPDEVETDSCCSDISE
Sbjct: 361 RVMKGDKQIVNCVEQHPYGIVIANCGIDKDIKIWAPGGSENPDEVETDSCCSDISESYDS 420
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSVSINEDMSYEEKDAASDHDSDV 480
GLSVSINEDMSYEEKDAASDHDSDV
Sbjct: 421 VYFDDYIFSSDFDSSEEDDEDDDDDDDDDDDDEEDGLSVSINEDMSYEEKDAASDHDSDV 480
>Os10g0544500 WD40-like domain containing protein
Length = 499
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/395 (48%), Positives = 257/395 (65%), Gaps = 11/395 (2%)
Query: 9 AGLWEREVGCLPPKLFANSVMASQDFVRSLGVQKRLRKHRGCVNTISFNEDGSLLLSGSD 68
A L REVG L P+ FA AS+D V L V ++L +H GCVNT+ FN DG L+SGSD
Sbjct: 16 ADLCLREVGLLLPRRFARRAAASEDLVMRLQVHRKLNRHTGCVNTVGFNADGDTLISGSD 75
Query: 69 DRAAVLWNWQEGTPTFAFHTGHSDNVFHALFMPFSGDRSIITCAADGQVRHSQIQEGGRV 128
D+ +LW+W G F +GHS+NVF A FMP++ D++I+TCAADG+VR ++I +GG V
Sbjct: 76 DQMVMLWDWDTGAIKLQFPSGHSNNVFQARFMPYTNDQTIVTCAADGEVRLAKIGDGGDV 135
Query: 129 ITNELVDTEVAVHKLAIEPGNPHTFFSCGDNGSVFLFDLREKYVAELFKCAEVDHFGGDT 188
T L D + HKLAIEPG+P+ F+SCG++G V FDLR +LF+C G +
Sbjct: 136 PTTLLGDHDGRAHKLAIEPGSPYIFYSCGEDGLVQHFDLRTNTATKLFQCRNSLSKSGHS 195
Query: 189 --IELYAIAIDPRKPSCFAVAGSDEYVRIYDSRKIDVNGNSSFGRPIEYFCPPHMMGENK 246
I L AI IDPR P+ AV GS+ Y R+YD RK +G+S + P + +CPPH++G
Sbjct: 196 SNIHLNAITIDPRNPNLLAVGGSNCYARVYDIRKYKWDGSSDY--PSDCYCPPHLIGNRF 253
Query: 247 DGISGLAFSQTSELLASYSYDNIYLFSREHGLHFNNIEVGKRLLMDEIEGDCHINTAPLP 306
GI+GLAFS SELL SY+ +NIYLF + GL + K IE + + +
Sbjct: 254 VGITGLAFSHQSELLISYNNENIYLFPKNGGLGPDPKSSVK------IEANKGSKSTIVS 307
Query: 307 FCRD-KLPAPQIFKGHRNKHTMKGVNFLGPNCDYVTTGSDCGRVFIWRKKDGELMRVMKG 365
D PAP ++ GHRN T+KGV F+GPN +YV +GSDCGR+FIWRKKDG+ +R M+G
Sbjct: 308 SGEDVDRPAPLMYAGHRNCETVKGVTFIGPNHEYVASGSDCGRLFIWRKKDGKFLRAMEG 367
Query: 366 DKQIVNCVEQHPYGIVIANCGIDKDIKIWAPGGSE 400
D+ +VNC+E HP+ + IA+ GID D+KIW P +E
Sbjct: 368 DECVVNCIEPHPHTMTIASSGIDNDVKIWTPSATE 402
>Os03g0286800 Similar to WD and tetratricopeptide repeats protein 1
Length = 477
Score = 343 bits (880), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 170/388 (43%), Positives = 236/388 (60%), Gaps = 21/388 (5%)
Query: 13 EREVGCLPPKLFANSVMASQDFVRSLGVQKRLRKHRGCVNTISFNEDGSLLLSGSDDRAA 72
+E+G P+ + + S+ V + +LR H GCVNT+SFN G+LL+SGSDD
Sbjct: 21 RQEIGSSTPRASSRRISGSEGLVMRMHQYGKLRGHDGCVNTVSFNPAGNLLVSGSDDMDI 80
Query: 73 VLWNWQEGTPTFAFHTGHSDNVFHALFMPFSGDRSIITCAADGQVRHSQIQEGGRVITNE 132
+LW+W T + +GH +NVFHA MPF+ D +I+T AADGQVR Q+ EGG V T +
Sbjct: 81 ILWDWLAKTQRLIYPSGHQENVFHARVMPFTDDSAIVTVAADGQVRVGQLNEGGEVTTKQ 140
Query: 133 LVDTEVAVHKLAIEPGNPHTFFSCGDNGSVFLFDLREKYVAELFKCAEVDHFGGDTIELY 192
+ + HKLAIEPG+P+ F+SCG++G V FDLR +LF C + + L
Sbjct: 141 IGVHDDRAHKLAIEPGSPYIFYSCGEDGLVQHFDLRNDSPMKLFSCYSFSN-SRRRVRLN 199
Query: 193 AIAIDPRKPSCFAVAGSDEYVRIYDSRKIDVNGNSSFGRPIEYFCPPHMMGENKDGISGL 252
IAIDP P+ ++ GSDEYVR+YD R+I + ++ +P++ FCP H+MG K I+G+
Sbjct: 200 TIAIDPWNPNYLSIGGSDEYVRVYDLRRIQLGASNDMNQPVDTFCPKHLMG-GKVHITGI 258
Query: 253 AFSQTSELLASYSYDNIYLFSREHGLHFNNIEVGKRLLMDEIEGDCHINTAPLPFCRDKL 312
A+S E+L SY+ ++IYLF GL N L D+L
Sbjct: 259 AYSYAREILVSYNDEHIYLFQNNMGLGPNPESAQAEFL-------------------DRL 299
Query: 313 PAPQIFKGHRNKHTMKGVNFLGPNCDYVTTGSDCGRVFIWRKKDGELMRVMKGDKQIVNC 372
PQ + GHRN T+KGV+F GPN +YV +GSDCG VF+WRKK GEL+R+M GDK +VNC
Sbjct: 300 EQPQAYTGHRNFRTVKGVSFFGPNDEYVLSGSDCGNVFVWRKKGGELLRMMHGDKSVVNC 359
Query: 373 VEQHPYGIVIANCGIDKDIKIWAPGGSE 400
+E HP+ +A GIDK +KIW P ++
Sbjct: 360 IEPHPHFPFLATSGIDKTVKIWTPSANK 387
>Os03g0187300 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 384
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 316 QIFKGHRNKHT-MKGVNFLGPNCDYVTTGSDCGRVFIWRKKDGELMRVMKGDKQIVNCVE 374
Q + H N T +K +FLG +++ +GSD GR FIW K+ G L++++ GD +VNC++
Sbjct: 243 QRYVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVVNCIQ 302
Query: 375 QHPYGIVIANCGIDKDIKIWAP 396
HPY +A GID IK+W P
Sbjct: 303 SHPYDCAVATSGIDNTIKLWTP 324
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,869,898
Number of extensions: 723858
Number of successful extensions: 1920
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1906
Number of HSP's successfully gapped: 4
Length of query: 480
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 375
Effective length of database: 11,553,331
Effective search space: 4332499125
Effective search space used: 4332499125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)