BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0724400 Os06g0724400|AK099961
         (205 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0724400  Zinc finger, Zim17-type family protein              392   e-110
Os01g0605200  Zinc finger, Zim17-type family protein               78   4e-15

>Os06g0724400 Zinc finger, Zim17-type family protein
          Length = 205

 Score =  392 bits (1008), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/205 (92%), Positives = 190/205 (92%)

Query: 1   MESVAIATTXXXXXXXXXXXXXXXCRRRASFLPVAASNRRHHDDDDEEVAKAHEPTSLAS 60
           MESVAIATT               CRRRASFLPVAASNRRHHDDDDEEVAKAHEPTSLAS
Sbjct: 1   MESVAIATTSRSLLPLPPFSSNRRCRRRASFLPVAASNRRHHDDDDEEVAKAHEPTSLAS 60

Query: 61  YGLSISPLSKDAAMGLVVSAATGRGWTTGSGMEGPPKAAGGGDRPEVSTLPWSLFTKSPR 120
           YGLSISPLSKDAAMGLVVSAATGRGWTTGSGMEGPPKAAGGGDRPEVSTLPWSLFTKSPR
Sbjct: 61  YGLSISPLSKDAAMGLVVSAATGRGWTTGSGMEGPPKAAGGGDRPEVSTLPWSLFTKSPR 120

Query: 121 RRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNIFHKLVDNLNLFHEMKCYVGPD 180
           RRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNIFHKLVDNLNLFHEMKCYVGPD
Sbjct: 121 RRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNIFHKLVDNLNLFHEMKCYVGPD 180

Query: 181 FRYEGDAPFNYLDRGEDGDNIFPIL 205
           FRYEGDAPFNYLDRGEDGDNIFPIL
Sbjct: 181 FRYEGDAPFNYLDRGEDGDNIFPIL 205



>Os01g0605200 Zinc finger, Zim17-type family protein
          Length = 154

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 101 GGDRPEVSTLPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNIF 160
            G  P  ST   +L    PRR + V FTCN CG+RT R IN  AY  GT+F+QC GC ++
Sbjct: 72  AGSAPAESTFDLNL----PRRSLLVQFTCNACGERTKRLINRVAYERGTIFLQCAGCQVY 127

Query: 161 HKLVDNLNLFHE 172
           HK VDNL L  E
Sbjct: 128 HKFVDNLGLVVE 139



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,753,066
Number of extensions: 350606
Number of successful extensions: 1572
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1570
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)