Os01g0605200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, Zim17-type family protein.
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Os01g0605200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, Zim17-type family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.85 | 0.453 | 5.95 | 0.129 | 0.439 | 1.87 | -0.615 | 1.07 | -0.16 | 10.2 | 8.973 | 20 | -- | -- |
| 93.64 | 0.451 | 5.97 | -0.0223 | 0.441 | 1.87 | -0.392 | -- | -0.199 | 10.3 | 11.34 | 19 | -- | -- |
| 94 | 0.452 | 5.95 | 0.0796 | 0.456 | 1.74 | -- | 0.725 | -0.145 | 10.9 | 5.358 | 19 | -- | -- |
| 94.14 | 0.452 | 5.97 | -0.0243 | 0.452 | 1.81 | -- | -- | -0.19 | 10.8 | 9.753 | 19 | -- | -- |
| 104.12 | 0.475 | 5.98 | -0.0254 | -- | 2.15 | -- | 0.494 | -0.219 | -- | 12.3 | 7 | -- | -- |
| 124.77 | 0.524 | 5.91 | 0.324 | 0.859 | -- | 0.205 | -- | 0.0654 | 12.8 | -- | -- | -- | -- |
| 124.94 | 0.523 | 5.91 | 0.331 | 0.858 | -- | -- | -- | 0.0662 | 12.8 | -- | -- | -- | -- |
| 104.32 | 0.476 | 5.99 | -0.0932 | -- | 2.16 | -- | -- | -0.238 | -- | 11.48 | 7 | -- | -- |
| 94.15 | 0.452 | 5.97 | -- | 0.455 | 1.79 | -- | -- | -0.186 | 10.8 | 10.27 | 19 | -- | -- |
| 171 | 0.611 | 5.93 | 0.3 | -- | -- | -- | -- | 0.0507 | -- | -- | -- | -- | -- |
| 127.82 | 0.529 | 5.92 | -- | 0.853 | -- | -- | -- | 0.0294 | 12.7 | -- | -- | -- | -- |
| 104.54 | 0.476 | 5.99 | -- | -- | 2.13 | -- | -- | -0.224 | -- | 11.38 | 7 | -- | -- |
| 173.38 | 0.615 | 5.93 | -- | -- | -- | -- | -- | 0.0174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 2 | 89.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 4 | 89.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 8 | 91.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 11 | 91.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 26 | 92.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 30 | 92.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 35 | 92.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 36 | 92.91 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 47 | 93.24 | temperature | 15 | 90 | > th | dose dependent | sin | 3 | NA |
| 49 | 93.25 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 53 | 93.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 69 | 93.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 92 | 94.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 108 | 94.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 115 | 94.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 144 | 94.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 159 | 94.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 160 | 94.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 167 | 94.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 177 | 95.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 181 | 95.07 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 192 | 95.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 218 | 95.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 236 | 95.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 242 | 95.64 | temperature | 30 | 30 | < th | dose dependent | sin | 1 | NA |
| 267 | 95.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 18 |
| 289 | 96.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 293 | 96.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 343 | 96.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 411 | 96.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 441 | 97.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 497 | 97.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 543 | 97.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 566 | 98.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 587 | 98.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 715 | 99.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 751 | 99.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 771 | 99.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 853 | 99.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 881 | 99.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |