BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0605200 Os01g0605200|Os01g0605200
         (154 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0605200  Zinc finger, Zim17-type family protein              242   7e-65
Os06g0724400  Zinc finger, Zim17-type family protein               78   2e-15

>Os01g0605200 Zinc finger, Zim17-type family protein
          Length = 154

 Score =  242 bits (618), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 126/133 (94%), Positives = 126/133 (94%)

Query: 22  SVSRRRAPLSCVSLAXXXXXXXTAEFPGLRVSCLRRILAVSACSGEADSDAGSAPAESTF 81
           SVSRRRAPLSCVSLA       TAEFPGLRVSCLRRILAVSACSGEADSDAGSAPAESTF
Sbjct: 22  SVSRRRAPLSCVSLASSSSRRRTAEFPGLRVSCLRRILAVSACSGEADSDAGSAPAESTF 81

Query: 82  DLNLPRRSLLVQFTCNACGERTKRLINRVAYERGTIFLQCAGCQVYHKFVDNLGLVVEYD 141
           DLNLPRRSLLVQFTCNACGERTKRLINRVAYERGTIFLQCAGCQVYHKFVDNLGLVVEYD
Sbjct: 82  DLNLPRRSLLVQFTCNACGERTKRLINRVAYERGTIFLQCAGCQVYHKFVDNLGLVVEYD 141

Query: 142 LREENGMNTDTET 154
           LREENGMNTDTET
Sbjct: 142 LREENGMNTDTET 154



>Os06g0724400 Zinc finger, Zim17-type family protein
          Length = 205

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 72  AGSAPAESTFDLNL----PRRSLLVQFTCNACGERTKRLINRVAYERGTIFLQCAGCQVY 127
            G  P  ST   +L    PRR + V FTCN CG+RT R IN  AY  GT+F+QC GC ++
Sbjct: 101 GGDRPEVSTLPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNIF 160

Query: 128 HKFVDNLGLVVE 139
           HK VDNL L  E
Sbjct: 161 HKLVDNLNLFHE 172



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,172,736
Number of extensions: 146081
Number of successful extensions: 316
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 2
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)