BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0716800 Os06g0716800|AK071639
(272 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0716800 Eukaryotic transcription factor, DNA-binding d... 536 e-153
Os05g0495200 Eukaryotic transcription factor, DNA-binding d... 125 3e-29
>Os06g0716800 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 272
Score = 536 bits (1380), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/272 (95%), Positives = 260/272 (95%)
Query: 1 MDDGDLDFSNPDTFLCPAVGGADPDGSCSMDSYFDDILKDXXXXXXXXXXXXNPPVHDLS 60
MDDGDLDFSNPDTFLCPAVGGADPDGSCSMDSYFDDILKD NPPVHDLS
Sbjct: 1 MDDGDLDFSNPDTFLCPAVGGADPDGSCSMDSYFDDILKDTEHHACTHTHTCNPPVHDLS 60
Query: 61 HTHTCVHVHTKIVSAPSDTPSDAAETAESPTENNASKKRPSGNRAAVRKYREKKKAHTAS 120
HTHTCVHVHTKIVSAPSDTPSDAAETAESPTENNASKKRPSGNRAAVRKYREKKKAHTAS
Sbjct: 61 HTHTCVHVHTKIVSAPSDTPSDAAETAESPTENNASKKRPSGNRAAVRKYREKKKAHTAS 120
Query: 121 LEEEVVHLRALNQQLMKKLQNHATLEAEVSRLRCLLVDIRGRIEGEIGAFPYQRPVKNID 180
LEEEVVHLRALNQQLMKKLQNHATLEAEVSRLRCLLVDIRGRIEGEIGAFPYQRPVKNID
Sbjct: 121 LEEEVVHLRALNQQLMKKLQNHATLEAEVSRLRCLLVDIRGRIEGEIGAFPYQRPVKNID 180
Query: 181 LVSSVDQGSYLGGAQVMNSCDFRCADQMYCSPGMQVRTMGEDGAVSGQVLGQGACDIASI 240
LVSSVDQGSYLGGAQVMNSCDFRCADQMYCSPGMQVRTMGEDGAVSGQVLGQGACDIASI
Sbjct: 181 LVSSVDQGSYLGGAQVMNSCDFRCADQMYCSPGMQVRTMGEDGAVSGQVLGQGACDIASI 240
Query: 241 QCQGAKSGSAKLPVCGAMGTMPVGCMPNSEKK 272
QCQGAKSGSAKLPVCGAMGTMPVGCMPNSEKK
Sbjct: 241 QCQGAKSGSAKLPVCGAMGTMPVGCMPNSEKK 272
>Os05g0495200 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 224
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 96/161 (59%), Gaps = 6/161 (3%)
Query: 92 ENNASKKRPSGNRAAVRKYREKKKAHTASLEEEVVHLRALNQQLMKKLQNHATLEAEVSR 151
E+ +RP GNR AVRKYREKKKAH A LEEEV LRA NQQL+K+LQ HA LEAEV R
Sbjct: 68 EDLTKTRRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLKRLQGHAALEAEVIR 127
Query: 152 LRCLLVDIRGRIEGEIGAFPYQRPVKNIDLVSSVDQGSYLGGAQVMNSCDFRCADQMYCS 211
LR +L+D+RG+I+ EIG FPYQ+P ++ V+ D G G + C+
Sbjct: 128 LRSILLDVRGKIDMEIGTFPYQKPC-SVGSVACTDPGMCFNGNSEIGGVWEECS-----R 181
Query: 212 PGMQVRTMGEDGAVSGQVLGQGACDIASIQCQGAKSGSAKL 252
P R + +DG++S ++ G S+ G+ SA L
Sbjct: 182 PVGADRMIDKDGSMSQEIDIPGPVHSISMDVVGSLVTSASL 222
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,706,492
Number of extensions: 390675
Number of successful extensions: 1508
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1506
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)