FiT-DB / Search/ Help/ Sample detail

Os05g0495200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eukaryotic transcription factor, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.34 (0.0186) R2 : 0.286
β1 : -0.763 (0.0681) R2dD : 0.204 R2D : 0.0947
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.379 (0.0397) R2dN8 : 0.192 R2N8 : 0.0822
σ : 0.349
deviance : 55.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.22 0.309 9.33 -0.752 0.482 -0.549 -0.677 0.0724 -0.358 12.4 29.97 80 -- --
43.22 0.306 9.33 -0.75 0.483 -0.557 -0.66 -- -0.358 12.3 29.98 80 -- --
44.91 0.312 9.33 -0.748 0.465 -0.5 -- -0.247 -0.352 12.2 30.59 81 -- --
45.04 0.313 9.33 -0.769 0.49 -0.505 -- -- -0.359 12.2 27.35 81 -- --
55.25 0.348 9.35 -0.78 -- -0.301 -- 0.0371 -0.389 -- 51.9 95 -- --
47.08 0.322 9.34 -0.73 0.337 -- -0.571 -- -0.371 12.2 -- -- -- --
48.48 0.326 9.34 -0.753 0.339 -- -- -- -0.374 12.1 -- -- -- --
52.98 0.339 9.35 -0.834 -- -0.489 -- -- -0.402 -- 55.1 1029 -- --
60.38 0.362 9.3 -- 0.514 -0.499 -- -- -0.235 12.5 20.42 95 -- --
55.73 0.349 9.34 -0.763 -- -- -- -- -0.379 -- -- -- -- --
63.4 0.372 9.32 -- 0.35 -- -- -- -0.291 12.2 -- -- -- --
69.73 0.389 9.33 -- -- -0.248 -- -- -0.297 -- 50 1041 -- --
71.1 0.394 9.33 -- -- -- -- -- -0.295 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.15 radiation 40.0 90 < th dose independent rect. 4 21
2 40.31 radiation 40.0 90 < th dose independent rect. 4 7
7 40.94 atmosphere 1000.0 270 > th dose independent rect. 22 14
8 40.95 temperature 10.0 90 > th dose dependent rect. 4 5
13 41.06 wind 5.0 90 < th dose independent rect. 4 5
15 41.13 temperature 30.0 90 < th dose independent rect. 4 5
16 41.13 precipitation 0.1 90 < th dose independent rect. 4 5
17 41.13 precipitation 0.1 90 < th dose dependent rect. 4 5
19 41.14 temperature 10.0 90 > th dose independent rect. 4 5
21 41.14 humidity 50.0 90 > th dose independent rect. 4 5
22 41.14 atmosphere 995.0 90 > th dose independent rect. 4 5
23 41.14 atmosphere 1015.0 90 < th dose independent rect. 4 5
24 41.14 temperature 10.0 90 > th dose independent rect. 9 19
26 41.20 atmosphere 995.0 90 > th dose independent rect. 9 19
27 41.21 precipitation 0.1 270 < th dose independent rect. 12 11
29 41.21 precipitation 0.1 270 < th dose dependent rect. 12 11
30 41.24 radiation 40.0 90 < th dose independent rect. 4 5
32 41.33 wind 5.0 270 < th dose independent rect. 4 3
36 41.39 atmosphere 995.0 270 > th dose independent rect. 7 21
38 41.40 radiation 40.0 90 < th dose independent rect. 4 13
39 41.41 wind 9.0 90 < th dose independent rect. 9 19
40 41.41 humidity 50.0 90 > th dose independent rect. 9 19
43 41.43 humidity 60.0 90 > th dose independent rect. 4 7
48 41.46 radiation 40.0 270 < th dose dependent rect. 4 4
49 41.47 atmosphere 1000.0 270 > th dose independent rect. 22 5
52 41.47 wind 9.0 270 < th dose dependent rect. 4 3
54 41.48 radiation 40.0 270 < th dose dependent rect. 3 10
57 41.51 wind 9.0 270 < th dose independent rect. 12 11
60 41.52 precipitation 0.1 270 < th dose independent rect. 4 3
62 41.52 precipitation 0.1 270 < th dose dependent rect. 4 3
63 41.53 wind 1.0 90 > th dose independent rect. 9 19
66 41.54 temperature 10.0 270 > th dose independent rect. 4 3
68 41.54 temperature 30.0 270 < th dose independent rect. 4 3
69 41.54 humidity 50.0 270 > th dose independent rect. 4 3
71 41.54 atmosphere 995.0 270 > th dose independent rect. 4 3
72 41.54 atmosphere 1015.0 270 < th dose independent rect. 4 3
75 41.54 temperature 10.0 270 > th dose independent rect. 7 21
77 41.55 wind 1.0 90 > th dose independent rect. 4 5
80 41.56 temperature 10.0 1440 > th dose independent rect. 5 5
83 41.56 atmosphere 995.0 1440 > th dose independent rect. 5 5
84 41.56 atmosphere 1015.0 1440 < th dose independent rect. 5 5
87 41.56 temperature 10.0 1440 > th dose independent rect. 10 19
96 41.58 radiation 40.0 90 < th dose independent rect. 4 11
98 41.59 radiation 40.0 270 < th dose dependent rect. 3 8
112 41.67 temperature 10.0 270 > th dose independent rect. 12 11
113 41.67 temperature 10.0 270 > th dose independent rect. 23 13
120 41.69 atmosphere 1015.0 90 < th dose independent rect. 9 19
126 41.71 precipitation 0.1 90 < th dose independent rect. 9 19
127 41.71 precipitation 0.1 90 < th dose dependent rect. 9 19
129 41.72 wind 9.0 270 < th dose independent rect. 23 13
174 41.78 radiation 40.0 90 < th dose dependent rect. 4 21
175 41.79 humidity 50.0 270 > th dose independent rect. 23 13
177 41.79 humidity 50.0 270 > th dose dependent rect. 4 3
182 41.80 wind 1.0 270 > th dose independent rect. 12 10
183 41.80 radiation 20.0 270 < th dose independent rect. 3 10
211 41.84 atmosphere 995.0 90 > th dose dependent rect. 4 5
222 41.87 precipitation 0.1 270 < th dose independent rect. 23 13
225 41.87 precipitation 0.1 270 < th dose dependent rect. 23 13
242 41.91 radiation 1.0 270 > th dose dependent rect. 9 3
284 41.97 wind 9.0 270 < th dose independent rect. 7 21
291 41.99 humidity 50.0 270 > th dose independent rect. 8 10
300 42.01 humidity 70.0 90 > th dose independent rect. 17 11
301 42.01 atmosphere 1015.0 270 < th dose independent rect. 23 13
302 42.02 atmosphere 1000.0 270 > th dose independent rect. 23 3
353 42.11 wind 7.0 270 < th dose independent rect. 18 14
368 42.12 temperature 30.0 90 < th dose independent rect. 10 18
370 42.12 temperature 25.0 10 > th dose independent rect. 14 19
396 42.13 temperature 30.0 270 < th dose independent rect. 16 12
405 42.14 precipitation 0.1 270 < th dose independent rect. 7 21
406 42.14 atmosphere 1015.0 270 < th dose dependent rect. 12 10
407 42.14 precipitation 0.1 270 < th dose dependent rect. 7 21
419 42.17 temperature 15.0 270 > th dose independent rect. 3 19
438 42.19 radiation 40.0 270 < th dose dependent rect. 15 12
439 42.19 temperature 10.0 270 > th dose dependent rect. 3 19
440 42.20 radiation 20.0 270 > th dose independent rect. 9 3
443 42.20 radiation 30.0 270 < th dose independent rect. 18 14
445 42.20 temperature 30.0 270 < th dose dependent rect. 23 3
448 42.20 temperature 10.0 270 > th dose dependent rect. 12 10
449 42.20 humidity 50.0 90 > th dose dependent rect. 17 11
450 42.20 radiation 20.0 270 < th dose dependent rect. 16 12
455 42.21 temperature 30.0 270 < th dose independent rect. 8 20
488 42.26 atmosphere 1015.0 90 < th dose dependent rect. 4 5
513 42.28 atmosphere 995.0 90 > th dose dependent rect. 9 19
515 42.29 atmosphere 1000.0 30 > th dose independent rect. 1 3
520 42.30 radiation 20.0 30 < th dose dependent sin 11 NA
525 42.31 radiation 20.0 270 < th dose independent rect. 15 12
567 42.34 precipitation 0.1 270 < th dose independent rect. 3 19
571 42.34 precipitation 0.1 270 < th dose dependent rect. 3 19
588 42.35 precipitation 0.1 720 < th dose independent rect. 10 14
598 42.35 precipitation 0.1 720 < th dose dependent rect. 10 14
607 42.36 atmosphere 995.0 270 > th dose dependent rect. 4 3
618 42.38 precipitation 0.1 270 < th dose independent rect. 18 14
625 42.38 precipitation 0.1 270 < th dose dependent rect. 18 14
641 42.40 humidity 50.0 1440 > th dose independent rect. 5 6
656 42.40 temperature 10.0 30 > th dose dependent rect. 4 21
662 42.41 temperature 15.0 90 > th dose independent rect. 4 21
665 42.41 temperature 30.0 30 < th dose dependent rect. 17 12
666 42.41 temperature 10.0 90 > th dose dependent rect. 20 13
672 42.42 temperature 15.0 90 > th dose independent rect. 20 13
685 42.44 atmosphere 1015.0 270 < th dose independent rect. 12 10
708 42.47 atmosphere 995.0 270 > th dose independent rect. 8 10
709 42.47 wind 1.0 90 > th dose independent rect. 9 11
721 42.48 temperature 25.0 10 > th dose independent rect. 13 22
726 42.48 temperature 30.0 90 < th dose dependent rect. 15 13
747 42.51 temperature 30.0 90 < th dose independent rect. 20 13
749 42.51 radiation 1.0 30 < th dose dependent rect. 22 23
753 42.52 temperature 10.0 90 > th dose independent rect. 9 11
754 42.52 atmosphere 1015.0 90 < th dose independent rect. 9 11
756 42.52 humidity 50.0 90 > th dose independent rect. 20 13
757 42.52 atmosphere 995.0 90 > th dose independent rect. 20 13
761 42.52 precipitation 0.1 720 < th dose independent rect. 10 23
766 42.52 precipitation 0.1 720 < th dose dependent rect. 10 23
767 42.53 precipitation 0.1 90 < th dose independent rect. 20 13
772 42.53 temperature 30.0 90 < th dose dependent rect. 1 3
777 42.53 humidity 50.0 90 > th dose dependent rect. 4 7
778 42.53 precipitation 0.1 90 < th dose dependent rect. 20 13
793 42.55 radiation 1.0 90 > th dose independent rect. 18 15
795 42.55 wind 9.0 270 < th dose independent rect. 3 19
814 42.56 humidity 50.0 270 > th dose dependent rect. 22 5
831 42.56 temperature 30.0 30 < th dose dependent rect. 14 15
869 42.58 atmosphere 1015.0 270 < th dose dependent rect. 4 2
895 42.59 radiation 40.0 10 < th dose dependent rect. 4 21
936 42.62 temperature 25.0 10 < th dose independent rect. 24 5
945 42.62 temperature 15.0 270 > th dose independent rect. 2 21
968 42.64 precipitation 0.1 270 < th dose independent rect. 2 21
973 42.64 temperature 30.0 90 < th dose dependent rect. 11 17
974 42.64 precipitation 0.1 270 < th dose dependent rect. 2 21
977 42.65 radiation 1.0 90 > th dose independent rect. 4 5
992 42.65 radiation 30.0 270 > th dose dependent sin 10 NA