BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0495200 Os05g0495200|AK072281
         (224 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0495200  Eukaryotic transcription factor, DNA-binding d...   410   e-115
Os06g0716800  Eukaryotic transcription factor, DNA-binding d...   125   3e-29

>Os05g0495200 Eukaryotic transcription factor, DNA-binding domain containing
           protein
          Length = 224

 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/224 (90%), Positives = 203/224 (90%)

Query: 1   MDDVPSQLLFSHPEVPDSFDDFLNNIXXXXXXXXXNPPGPSAXXXXXXXXXXXXQVFASG 60
           MDDVPSQLLFSHPEVPDSFDDFLNNI         NPPGPSA            QVFASG
Sbjct: 1   MDDVPSQLLFSHPEVPDSFDDFLNNITTCTHTHTCNPPGPSATMHTHTCLHTHTQVFASG 60

Query: 61  SGEDDIKEDLTKTRRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLKRLQGHAA 120
           SGEDDIKEDLTKTRRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLKRLQGHAA
Sbjct: 61  SGEDDIKEDLTKTRRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLKRLQGHAA 120

Query: 121 LEAEVIRLRSILLDVRGKIDMEIGTFPYQKPCSVGSVACTDPGMCFNGNSEIGGVWEECS 180
           LEAEVIRLRSILLDVRGKIDMEIGTFPYQKPCSVGSVACTDPGMCFNGNSEIGGVWEECS
Sbjct: 121 LEAEVIRLRSILLDVRGKIDMEIGTFPYQKPCSVGSVACTDPGMCFNGNSEIGGVWEECS 180

Query: 181 RPVGADRMIDKDGSMSQEIDIPGPVHSISMDVVGSLVTSASLSE 224
           RPVGADRMIDKDGSMSQEIDIPGPVHSISMDVVGSLVTSASLSE
Sbjct: 181 RPVGADRMIDKDGSMSQEIDIPGPVHSISMDVVGSLVTSASLSE 224



>Os06g0716800 Eukaryotic transcription factor, DNA-binding domain containing
           protein
          Length = 272

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 96/161 (59%), Gaps = 6/161 (3%)

Query: 68  EDLTKTRRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLKRLQGHAALEAEVIR 127
           E+    +RP GNR AVRKYREKKKAH A LEEEV  LRA NQQL+K+LQ HA LEAEV R
Sbjct: 92  ENNASKKRPSGNRAAVRKYREKKKAHTASLEEEVVHLRALNQQLMKKLQNHATLEAEVSR 151

Query: 128 LRSILLDVRGKIDMEIGTFPYQKPC-SVGSVACTDPGMCFNGNSEIGGVWEECS-----R 181
           LR +L+D+RG+I+ EIG FPYQ+P  ++  V+  D G    G   +      C+      
Sbjct: 152 LRCLLVDIRGRIEGEIGAFPYQRPVKNIDLVSSVDQGSYLGGAQVMNSCDFRCADQMYCS 211

Query: 182 PVGADRMIDKDGSMSQEIDIPGPVHSISMDVVGSLVTSASL 222
           P    R + +DG++S ++   G     S+   G+   SA L
Sbjct: 212 PGMQVRTMGEDGAVSGQVLGQGACDIASIQCQGAKSGSAKL 252



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,561,713
Number of extensions: 301914
Number of successful extensions: 711
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 2
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)