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Os06g0716800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eukaryotic transcription factor, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0135) R2 : 0.707
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.17 (0.0355) R2dC : 0.705 R2C : 0.703
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0688 (0.0285) R2dN8 : 0.00484 R2N8 : 0.00278
σ : 0.255
deviance : 29.81
__
_____
C
peak time of C : 6.27
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.11 0.231 12.5 0.296 1.24 -0.822 0.0494 1.79 0.13 6.29 50 338 -- --
24.37 0.23 12.5 0.34 1.23 -0.328 0.139 -- 0.126 6.27 52.15 336 -- --
24.12 0.229 12.5 0.296 1.24 -0.818 -- 1.81 0.129 6.3 50.01 337 -- --
23.45 0.226 12.5 0.321 1.18 -0.306 -- -- 0.16 6.45 55.34 1010 -- --
91.94 0.447 12.6 0.484 -- 0.616 -- -0.0337 0.103 -- 51.67 474 -- --
25.92 0.239 12.5 0.384 1.17 -- -0.104 -- 0.111 6.29 -- -- -- --
25.95 0.239 12.5 0.383 1.17 -- -- -- 0.111 6.29 -- -- -- --
59.3 0.359 12.6 0.411 -- 0.767 -- -- 0.179 -- 74 488 -- --
26.15 0.238 12.5 -- 1.17 -0.354 -- -- 0.134 6.46 55 1050 -- --
96.67 0.459 12.6 0.414 -- -- -- -- 0.137 -- -- -- -- --
29.81 0.255 12.6 -- 1.17 -- -- -- 0.0688 6.27 -- -- -- --
61.65 0.366 12.6 -- -- 0.86 -- -- 0.122 -- 75.74 498 -- --
101.2 0.47 12.6 -- -- -- -- -- 0.0908 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.76 temperature 15.0 10 > th dose dependent rect. 22 6
2 21.81 humidity 70.0 30 > th dose independent rect. 18 10
5 21.99 temperature 20.0 10 > th dose independent rect. 22 6
7 22.17 temperature 15.0 10 > th dose dependent rect. 20 8
12 22.25 humidity 50.0 270 > th dose independent rect. 5 22
13 22.27 temperature 20.0 90 > th dose independent rect. 7 20
27 22.43 temperature 15.0 270 > th dose dependent rect. 18 7
33 22.48 temperature 20.0 30 > th dose independent rect. 9 19
36 22.50 temperature 30.0 90 < th dose independent rect. 17 10
39 22.51 temperature 15.0 270 > th dose independent rect. 5 22
46 22.56 temperature 20.0 10 > th dose independent rect. 20 8
49 22.57 temperature 15.0 270 > th dose dependent rect. 22 2
52 22.58 temperature 10.0 10 > th dose dependent rect. 7 21
57 22.61 humidity 60.0 270 > th dose independent rect. 15 11
63 22.63 wind 3.0 30 < th dose independent rect. 4 3
75 22.70 humidity 50.0 14400 > th dose independent rect. 19 9
91 22.75 temperature 20.0 30 > th dose independent rect. 18 10
93 22.75 wind 5.0 30 < th dose dependent rect. 4 3
97 22.76 radiation 10.0 10 < th dose independent rect. 4 3
99 22.76 atmosphere 995.0 30 > th dose dependent rect. 4 14
102 22.77 atmosphere 1015.0 90 < th dose independent rect. 7 20
105 22.77 temperature 10.0 30 > th dose dependent rect. 4 3
107 22.78 humidity 80.0 30 > th dose independent rect. 4 3
109 22.78 humidity 50.0 720 > th dose independent rect. 15 19
110 22.78 humidity 50.0 90 > th dose independent rect. 7 20
111 22.78 temperature 10.0 270 > th dose dependent rect. 3 2
128 22.81 wind 5.0 270 < th dose independent rect. 3 2
131 22.81 precipitation 0.1 30 < th dose independent rect. 7 21
136 22.81 precipitation 0.1 30 < th dose dependent rect. 7 21
139 22.82 wind 9.0 30 < th dose independent rect. 7 21
140 22.82 atmosphere 995.0 30 > th dose independent rect. 7 21
144 22.83 wind 3.0 10 < th dose independent rect. 4 5
145 22.83 temperature 30.0 270 < th dose independent rect. 15 11
150 22.83 atmosphere 1015.0 90 < th dose dependent rect. 7 8
159 22.84 temperature 10.0 10 > th dose dependent rect. 9 19
160 22.85 precipitation 0.1 270 < th dose independent rect. 3 2
161 22.85 precipitation 0.1 90 < th dose independent rect. 3 4
166 22.85 precipitation 0.1 270 < th dose dependent rect. 3 2
167 22.85 precipitation 0.1 90 < th dose dependent rect. 3 4
181 22.87 temperature 10.0 30 > th dose independent rect. 4 3
183 22.87 temperature 30.0 30 < th dose independent rect. 4 3
184 22.87 humidity 50.0 30 > th dose independent rect. 4 3
187 22.87 atmosphere 995.0 30 > th dose independent rect. 4 3
188 22.87 atmosphere 1015.0 30 < th dose independent rect. 4 3
194 22.87 radiation 40.0 10 < th dose dependent rect. 4 3
195 22.87 wind 5.0 10 < th dose dependent rect. 4 5
197 22.87 radiation 40.0 10 < th dose dependent rect. 4 8
199 22.88 humidity 80.0 270 > th dose independent rect. 3 2
211 22.89 atmosphere 995.0 10 > th dose dependent rect. 4 3
225 22.90 temperature 20.0 270 > th dose independent rect. 18 7
234 22.90 radiation 40.0 90 < th dose dependent rect. 3 10
240 22.92 humidity 50.0 720 > th dose independent rect. 15 2
262 22.93 humidity 50.0 30 > th dose dependent rect. 4 3
269 22.95 wind 9.0 270 < th dose dependent rect. 3 2
275 22.96 humidity 70.0 10 > th dose independent rect. 14 14
293 22.98 radiation 40.0 10 < th dose independent rect. 4 18
300 22.98 humidity 50.0 30 > th dose dependent rect. 18 10
303 22.99 radiation 40.0 10 < th dose dependent rect. 4 5
305 23.00 radiation 30.0 10 < th dose independent rect. 4 8
311 23.01 atmosphere 1010.0 10 < th dose independent rect. 22 6
333 23.02 radiation 1.0 270 < th dose dependent rect. 3 2
338 23.03 temperature 10.0 270 > th dose independent rect. 3 2
340 23.03 temperature 30.0 270 < th dose independent rect. 3 2
341 23.03 humidity 50.0 270 > th dose independent rect. 3 2
344 23.03 atmosphere 995.0 270 > th dose independent rect. 3 2
345 23.03 atmosphere 1010.0 270 < th dose independent rect. 3 2
347 23.03 radiation 1.0 270 < th dose independent rect. 3 2
357 23.03 humidity 50.0 270 > th dose dependent rect. 3 2
384 23.06 wind 9.0 270 < th dose independent rect. 5 22
387 23.06 humidity 50.0 4320 > th dose dependent rect. 3 2
398 23.07 atmosphere 1015.0 270 < th dose independent rect. 5 21
399 23.07 precipitation 0.1 270 < th dose independent rect. 5 22
407 23.07 radiation 1.0 30 < th dose dependent rect. 18 10
408 23.07 precipitation 0.1 270 < th dose dependent rect. 5 22
428 23.10 radiation 30.0 90 < th dose independent rect. 3 10
429 23.10 radiation 40.0 10 < th dose independent rect. 4 14
430 23.10 atmosphere 1010.0 10 < th dose independent rect. 9 19
431 23.10 atmosphere 995.0 270 > th dose dependent rect. 3 2
451 23.11 humidity 60.0 720 > th dose independent rect. 14 5
452 23.11 radiation 20.0 10 < th dose independent rect. 4 5
474 23.12 atmosphere 1015.0 10 < th dose dependent rect. 7 9
519 23.18 atmosphere 1000.0 30 > th dose independent rect. 4 14
538 23.19 radiation 40.0 10 < th dose independent rect. 4 16
549 23.19 wind 9.0 90 < th dose dependent rect. 18 9
556 23.20 wind 5.0 14400 > th dose dependent sin 5 NA
562 23.20 atmosphere 995.0 10 > th dose dependent rect. 4 5
581 23.22 humidity 90.0 4320 < th dose independent rect. 23 6
597 23.23 humidity 90.0 4320 < th dose independent rect. 23 8
599 23.23 radiation 1.0 30 < th dose independent rect. 18 10
601 23.23 wind 9.0 14400 > th dose independent rect. 18 19
603 23.23 precipitation 0.1 10 < th dose independent rect. 9 19
618 23.23 wind 7.0 14400 > th dose dependent rect. 20 18
619 23.23 precipitation 0.1 10 < th dose dependent rect. 9 19
629 23.24 wind 9.0 10 < th dose independent rect. 9 19
630 23.24 atmosphere 995.0 10 > th dose independent rect. 9 19
643 23.24 radiation 1.0 270 < th dose dependent rect. 2 16
651 23.25 atmosphere 1010.0 30 < th dose independent rect. 18 10
654 23.25 wind 9.0 14400 < th dose independent rect. 18 20
681 23.26 wind 5.0 14400 > th dose dependent rect. 24 14
689 23.27 precipitation 0.1 10 < th dose independent rect. 4 5
703 23.27 precipitation 0.1 10 < th dose dependent rect. 4 5
708 23.27 wind 9.0 90 < th dose dependent rect. 7 20
710 23.28 wind 3.0 43200 > th dose independent rect. 21 6
736 23.29 radiation 30.0 90 < th dose independent rect. 3 8
740 23.29 atmosphere 1000.0 30 > th dose independent rect. 4 18
746 23.30 wind 7.0 14400 > th dose independent sin 6 NA
750 23.30 temperature 10.0 10 > th dose independent rect. 4 5
752 23.30 temperature 30.0 10 < th dose independent rect. 4 5
753 23.30 humidity 50.0 10 > th dose independent rect. 4 5
756 23.30 atmosphere 995.0 10 > th dose independent rect. 4 5
757 23.30 atmosphere 1015.0 10 < th dose independent rect. 4 5
769 23.30 radiation 40.0 10 < th dose independent rect. 3 21
777 23.31 humidity 90.0 4320 < th dose independent rect. 2 1
795 23.31 wind 5.0 14400 < th dose independent rect. 1 12
796 23.31 wind 5.0 14400 < th dose independent rect. 24 14
797 23.31 radiation 1.0 270 < th dose independent rect. 2 16
816 23.32 wind 1.0 270 > th dose independent rect. 2 3
825 23.32 wind 5.0 14400 > th dose independent rect. 24 14
850 23.33 wind 5.0 14400 < th dose independent sin 5 NA
859 23.33 atmosphere 1010.0 10 < th dose independent rect. 20 8
870 23.33 atmosphere 1015.0 270 < th dose dependent rect. 7 3
883 23.34 wind 5.0 14400 > th dose independent rect. 1 12
904 23.34 radiation 40.0 10 < th dose dependent rect. 4 14
910 23.35 wind 1.0 270 > th dose independent rect. 3 1
912 23.35 wind 3.0 43200 < th dose independent rect. 21 6
932 23.36 wind 9.0 14400 < th dose independent sin 8 NA
937 23.36 wind 7.0 14400 < th dose independent rect. 20 17
994 23.38 wind 9.0 43200 > th dose independent rect. 23 15
999 23.38 atmosphere 995.0 270 > th dose independent rect. 5 21