BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0716800 Os06g0716800|AK071639
(272 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35040.1 | chr4:16680821-16681805 FORWARD LENGTH=262 208 2e-54
AT2G16770.1 | chr2:7279859-7280817 FORWARD LENGTH=250 200 6e-52
AT3G51960.2 | chr3:19282828-19284064 REVERSE LENGTH=229 116 1e-26
>AT4G35040.1 | chr4:16680821-16681805 FORWARD LENGTH=262
Length = 261
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 153/242 (63%), Gaps = 16/242 (6%)
Query: 1 MDDGDLDFSNPDTFLCPAVGGADPDGSCSMDSYFDDILKDXXXXXXXXXXXXNPPVHDLS 60
M+DG+LDFSN + F +G P +CSMDS+FD +L D NP + +
Sbjct: 1 MEDGELDFSNQEVFSSSEMGELPP-SNCSMDSFFDGLLMDTNAACTHTHTC-NPTGPENT 58
Query: 61 HTHTCVHVHTKIVSAPSDTPSDAAETAESPTENNASKKRPSGNRAAVRKYREKKKAHTAS 120
HTHTC HVHTKI+ SD +TAES + +KRP GNR AVRKYREKKKA AS
Sbjct: 59 HTHTCFHVHTKILPDESDEKVSTDDTAESCGK--KGEKRPLGNREAVRKYREKKKAKAAS 116
Query: 121 LEEEVVHLRALNQQLMKKLQNHATLEAEVSRLRCLLVDIRGRIEGEIGAFPYQRPVKNID 180
LE+EV LRA+NQQL+K+LQN ATLEAEVSRL+CLLVD+RGRI+GEIG+FPYQ+P
Sbjct: 117 LEDEVARLRAVNQQLVKRLQNQATLEAEVSRLKCLLVDLRGRIDGEIGSFPYQKP----- 171
Query: 181 LVSSVDQGSYLGGAQVMNSCDFRCADQMYCSPGMQVRTMGEDGAVSGQVLGQGACDIASI 240
+ +++ S++ MN C+ +C D++YC + E +++ Q G CD +
Sbjct: 172 MAANIPSFSHM-----MNPCNVQCDDEVYCPQNVFGVNSQEGASINDQ--GLSGCDFDQL 224
Query: 241 QC 242
QC
Sbjct: 225 QC 226
>AT2G16770.1 | chr2:7279859-7280817 FORWARD LENGTH=250
Length = 249
Score = 200 bits (509), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 124/267 (46%), Positives = 168/267 (62%), Gaps = 40/267 (14%)
Query: 1 MDDGDLDFSNPDTFLCPAVGGADPDGSCSMDSYFDDILKDXXXXXXXXXXXXNPPVHDLS 60
MDDG+L+FSN + +GG P SCSMDS+FD++L+D NPP + +
Sbjct: 1 MDDGELEFSNSN------MGGELP--SCSMDSFFDELLRDSHACTHTHTC--NPPGPENT 50
Query: 61 HTHTCVHVHTKIVSAPSDTPSDAAETAESPTENNASKKRPSGNRAAVRKYREKKKAHTAS 120
HTHTC+HVHTKI+ P +D +T+ES + KKRP GNR AVRKYREKKKA AS
Sbjct: 51 HTHTCLHVHTKIL--PDKVSTD--DTSES-----SGKKRPLGNREAVRKYREKKKAKAAS 101
Query: 121 LEEEVVHLRALNQQLMKKLQNHATLEAEVSRLRCLLVDIRGRIEGEIGAFPYQRP-VKNI 179
LE+EV+ L+A+N QL+K+LQ A LEAEV+RL+CLLVDIRGRI+GEIGAFPYQ+P V N+
Sbjct: 102 LEDEVMRLKAVNNQLLKRLQGQAALEAEVTRLKCLLVDIRGRIDGEIGAFPYQKPAVTNV 161
Query: 180 DLVSSVDQGSYLGGAQVMNSCDFRC-ADQMYCSPGMQVRTMGEDGAVSGQVLGQGACDIA 238
SY+ M+ C+ +C D +YC +Q GE +++ Q G C+
Sbjct: 162 PY-------SYM-----MHPCNMQCDVDNLYC---LQNGNNGEGASMNEQ--GLNGCEFD 204
Query: 239 SIQCQGAKSGSAK-LPVC-GAMGTMPV 263
++C ++ + K +PVC +GT V
Sbjct: 205 QLECLANQNLAGKEIPVCSNGIGTFTV 231
>AT3G51960.2 | chr3:19282828-19284064 REVERSE LENGTH=229
Length = 228
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 92/146 (63%), Gaps = 10/146 (6%)
Query: 53 NPP-VHDLSHTHTCVHVHTKIVSAPSDTPSDAAETAESPTENNASKKRPSGNRAAVRKYR 111
NPP D SH+HTC H HT ++ + +D ++++ +KKR GNR AVRKYR
Sbjct: 62 NPPGPEDASHSHTCFHAHTHLIISQDQQENDHSDSS--------NKKRLCGNREAVRKYR 113
Query: 112 EKKKAHTASLEEEVVHLRALNQQLMKKLQNHATLEAEVSRLRCLLVDIRGRIEGEIGAFP 171
EKKKA TA LE+EV+ L++LN+Q ++KLQ+ +E E+ RLR LLV+++G+IE E+ +F
Sbjct: 114 EKKKARTAYLEDEVMRLQSLNEQFLRKLQSQEMVETELIRLRALLVEMQGKIEVELCSFS 173
Query: 172 YQRPVKNIDLVSSVDQGSYLGGAQVM 197
+Q+ V D G L + +M
Sbjct: 174 FQKQCNGSGFVFKED-GCNLATSNMM 198
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,961,041
Number of extensions: 232863
Number of successful extensions: 889
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 882
Number of HSP's successfully gapped: 3
Length of query: 272
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 175
Effective length of database: 8,447,217
Effective search space: 1478262975
Effective search space used: 1478262975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)