BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0715000 Os06g0715000|AK107114
         (387 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0715000  Conserved hypothetical protein                      670   0.0  
Os05g0490500  Conserved hypothetical protein                      131   9e-31

>Os06g0715000 Conserved hypothetical protein
          Length = 387

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/387 (85%), Positives = 332/387 (85%)

Query: 1   MEPGXXXXXXXXACADHPTPAPEEDEEGGRGWVVVPASEVPGADAPKVIDWEDLQQELAR 60
           MEPG        ACADHPTPAPEEDEEGGRGWVVVPASEVPGADAPKVIDWEDLQQELAR
Sbjct: 1   MEPGPSSPSPSSACADHPTPAPEEDEEGGRGWVVVPASEVPGADAPKVIDWEDLQQELAR 60

Query: 61  VWSLSXXXXXXXXXXXXXXXXXQSALEARKASVQQDNELAEIRERVQARADFMWDLKMHT 120
           VWSLS                 QSALEARKASVQQDNELAEIRERVQARADFMWDLKMHT
Sbjct: 61  VWSLSAALATARERKALLAARLQSALEARKASVQQDNELAEIRERVQARADFMWDLKMHT 120

Query: 121 KKMTEDVDDRREELRIKIRXXXXXXXXXXXARNKLKEADKLLSGENGLHVRLKTVERMLR 180
           KKMTEDVDDRREELRIKIR           ARNKLKEADKLLSGENGLHVRLKTVERMLR
Sbjct: 121 KKMTEDVDDRREELRIKIRTLSTTSNTLSTARNKLKEADKLLSGENGLHVRLKTVERMLR 180

Query: 181 TRQQYMTAQVAHLYPVRPLIERSPANKPSFLNSSILKTRDAESMAPNGSQNGQAPLAILG 240
           TRQQYMTAQVAHLYPVRPLIERSPANKPSFLNSSILKTRDAESMAPNGSQNGQAPLAILG
Sbjct: 181 TRQQYMTAQVAHLYPVRPLIERSPANKPSFLNSSILKTRDAESMAPNGSQNGQAPLAILG 240

Query: 241 LQLSKLTMKKTGYFSDKTEIQNSATALGYVAHAVSLIASYLDVPLRYPLRLGGSRSYVLD 300
           LQLSKLTMKKTGYFSDKTEIQNSATALGYVAHAVSLIASYLDVPLRYPLRLGGSRSYVLD
Sbjct: 241 LQLSKLTMKKTGYFSDKTEIQNSATALGYVAHAVSLIASYLDVPLRYPLRLGGSRSYVLD 300

Query: 301 RXXXXXXXXXXXXXXXXXXXTTMRTMEFPLFFESQETTRSAYAIFLLNKDIEQLLNHIGA 360
           R                   TTMRTMEFPLFFESQETTRSAYAIFLLNKDIEQLLNHIGA
Sbjct: 301 RAPSVESSSLASAISSAPLSTTMRTMEFPLFFESQETTRSAYAIFLLNKDIEQLLNHIGA 360

Query: 361 ESLGPRHVLANLKQLTTIVQSQQYISN 387
           ESLGPRHVLANLKQLTTIVQSQQYISN
Sbjct: 361 ESLGPRHVLANLKQLTTIVQSQQYISN 387



>Os05g0490500 Conserved hypothetical protein
          Length = 216

 Score =  131 bits (329), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 116/216 (53%), Gaps = 15/216 (6%)

Query: 182 RQQYMTAQVAHLYPVRPLIERSPANKPSFLNSSILKTRDAESMAPNGSQNGQAPLAILGL 241
           RQQ M  QVA LYPV+ +    P  +    N++      +E       +NG   L ++ L
Sbjct: 2   RQQSMIGQVAALYPVK-VFHDLPHGRNLNSNTNGAHRSLSEENGTLPEENGTHLLNVIKL 60

Query: 242 -QLSKLTM---------KKTGYFSDKTEIQNSATALGYVAHAVSLIASYLDVPLRYPLRL 291
            Q+  LT          +K     +K ++Q SA  LGY AHA+ LIASYL VPLRYPL  
Sbjct: 61  PQIHALTFLGWQIGKQRRKQNDICEK-DLQRSAAVLGYAAHAILLIASYLHVPLRYPLHF 119

Query: 292 GGSRSYVLDRXXXXXXXXXXXXXXXXXXXTTMRTMEFPLFFESQET--TRSAYAIFLLNK 349
           GGSRSYV D                    T  +   +PLF E QE   T+++YAI+LL+K
Sbjct: 120 GGSRSYVSDCLPSAETASIASAERTCINMTDPKLTVYPLFVECQEDDPTKASYAIYLLHK 179

Query: 350 DIEQLLNHIGAESLGPRHVLANLKQLTTIVQSQQYI 385
           D EQLLN+IGAES G R V  NL++L  I+QS +Y+
Sbjct: 180 DTEQLLNYIGAESSG-RRVFDNLQELIRIIQSDEYV 214



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,367,383
Number of extensions: 371010
Number of successful extensions: 1039
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1034
Number of HSP's successfully gapped: 2
Length of query: 387
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 284
Effective length of database: 11,657,759
Effective search space: 3310803556
Effective search space used: 3310803556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)