Os05g0490500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0490500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.84 | 0.508 | 9.97 | -3.37 | 0.827 | -0.685 | 1.02 | 2.29 | -0.882 | 6.4 | 19.21 | 1735 | -- | -- |
| 125.31 | 0.521 | 9.97 | -3.29 | 0.823 | -0.654 | 1.31 | -- | -0.861 | 6.36 | 19.83 | 1653 | -- | -- |
| 118.99 | 0.508 | 9.98 | -3.36 | 0.835 | -0.686 | -- | 2.41 | -0.883 | 6.59 | 19.21 | 1768 | -- | -- |
| 128.28 | 0.528 | 9.97 | -3.28 | 0.821 | -0.661 | -- | -- | -0.87 | 6.93 | 19.84 | 1654 | -- | -- |
| 152.63 | 0.575 | 10 | -3.33 | -- | -0.615 | -- | 2.04 | -0.884 | -- | 19.83 | 1641 | -- | -- |
| 138.31 | 0.551 | 9.94 | -3.21 | 0.737 | -- | 1.17 | -- | -0.721 | 6.68 | -- | -- | -- | -- |
| 140.6 | 0.555 | 9.94 | -3.19 | 0.748 | -- | -- | -- | -0.722 | 7.37 | -- | -- | -- | -- |
| 156.71 | 0.583 | 10 | -3.23 | -- | -0.652 | -- | -- | -0.896 | -- | 19.83 | 1507 | -- | -- |
| 379.22 | 0.907 | 9.86 | -- | 0.738 | -0.758 | -- | -- | -0.571 | 6.96 | 19.86 | 8617 | -- | -- |
| 170.39 | 0.61 | 9.96 | -3.18 | -- | -- | -- | -- | -0.71 | -- | -- | -- | -- | -- |
| 409.05 | 0.946 | 9.86 | -- | 0.72 | -- | -- | -- | -0.366 | 7.67 | -- | -- | -- | -- |
| 207.84 | 0.671 | 9.75 | -- | -- | -2.41 | -- | -- | 0.231 | -- | 60 | 47520 | -- | -- |
| 437 | 0.976 | 9.88 | -- | -- | -- | -- | -- | -0.357 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.75 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 6 | 114.26 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 7 | 114.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 14 | 114.36 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 16 | 114.38 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 19 | 114.48 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 35 | 114.68 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 59 | 115.19 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 17 |
| 122 | 116.10 | radiation | 10 | 720 | < th | dose independent | rect. | 11 | 20 |
| 145 | 116.34 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 165 | 116.56 | radiation | 10 | 1440 | < th | dose independent | sin | 16 | NA |
| 171 | 116.62 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 173 | 116.63 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 174 | 116.63 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 186 | 116.69 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 211 | 116.78 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 251 | 116.96 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 288 | 117.19 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 297 | 117.22 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 308 | 117.27 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 316 | 117.33 | humidity | 60 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 334 | 117.46 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 341 | 117.52 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 351 | 117.57 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 374 | 117.73 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 447 | 118.14 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 15 |
| 448 | 118.14 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 491 | 118.32 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 492 | 118.32 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 502 | 118.36 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 514 | 118.41 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 5 |
| 533 | 118.44 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 594 | 118.57 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 17 |
| 604 | 118.59 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |
| 612 | 118.60 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 681 | 118.80 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 691 | 118.82 | radiation | 10 | 720 | < th | dose dependent | no | NA | NA |
| 775 | 118.98 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 792 | 119.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 809 | 119.06 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 899 | 119.23 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 16 | NA |
| 941 | 119.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 942 | 119.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 957 | 119.29 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 21 |